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Trav3-3 Gene Detail
Summary
  • Symbol
    Trav3-3
  • Name
    T cell receptor alpha variable 3-3
Location &
Maps
more
  • Sequence Map
    Chr14:53903462-53903963 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    86 from dbSNP Build 142
  • Strain Annotations
    21
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3702145
 gene segment Chr14:53903386-53903963 (+)
129S1/SvImJ ENSMUSG00200042773
 gene segment Chr14:42458337-42458914 (+)
A/J ENSMUSG00195033927
 gene segment Chr14:42245349-42245926 (+)
AKR/J ENSMUSG00220029388
 gene segment Chr14:41605562-41606139 (-)
BALB/cJ ENSMUSG00180052389
 gene segment Chr14:41867790-41868367 (+)
C3H/HeJ ENSMUSG00175051963
 gene segment Chr14:43550268-43550845 (+)
C57BL/6NJ ENSMUSG00215049171
 gene segment Chr14:42226167-42226744 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005049136
 gene segment Chr14:44035013-44035595 (+)
CBA/J ENSMUSG00210045671
 gene segment Chr14:42223522-42224099 (+)
DBA/2J ENSMUSG00185056053
 gene segment Chr14:47732172-47732749 (+)
DBA/2J ENSMUSG00185052603
 protein coding gene Chr14:47135952-47136537 (+)
FVB/NJ ENSMUSG00205041518
 gene segment Chr14:42105457-42106034 (+)
JF1/MsJ ENSUMUG00000052132
 gene segment Chr14:59008825-59009402 (+)
LP/J ENSMUSG00230052973
 gene segment Chr14:59824407-59824984 (+)
LP/J ENSMUSG00230053573
 gene segment Chr14:59386346-59386923 (+)
NOD/ShiLtJ ENSMUSG00190047771
 gene segment Chr14:42345522-42346099 (+)
NZO/HlLtJ ENSMUSG00225051880
 gene segment Chr14:50122479-50123056 (+)
NZO/HlLtJ ENSMUSG00225052781
 gene segment Chr14:49684400-49684977 (+)
PWK/PhJ ENSLUMG00010049194
 gene segment Chr14:41436565-41437142 (+)
SPRET/EiJ ENSMSPG00010048940
 gene segment Chr14:45300362-45300939 (+)
WSB/EiJ ENSIUOG00005043743
 gene segment Chr14:41613944-41614526 (+)



Homology
more
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Synonyms
    TCRAV15S1, TCRAV5S1
  • Links
    NCBI Gene ID: 28688
    UniProt: A0A0B4J249

  • Chr Location
    14q11.2; chr14:21749178-21749705 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 320898 NCBI Gene Model | MGI Sequence Detail 502 C57BL/6J ±  kb
polypeptide Q5R1C3 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 21
  • Earliest
    J:7627 Saito H, et al., A third rearranged and expressed gene in a clone of cytotoxic T lymphocytes. Nature. 1984 Nov 1-7;312(5989):36-40
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory