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Trav9-4 Gene Detail
Summary
  • Symbol
    Trav9-4
  • Name
    T cell receptor alpha variable 9-4
  • Synonyms
    Gm13907
Location &
Maps
more
  • Sequence Map
    Chr14:53913653-53914085 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    95 from dbSNP Build 142
  • Strain Annotations
    20
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3702135
 gene segment Chr14:53913598-53914087 (+)
129S1/SvImJ ENSMUSG00200042814
 gene segment Chr14:42468370-42468858 (+)
A/J ENSMUSG00195033957
 gene segment Chr14:42255347-42255836 (+)
AKR/J ENSMUSG00220029565
 gene segment Chr14:41595666-41596154 (-)
BALB/cJ ENSMUSG00180052411
 gene segment Chr14:41877784-41878273 (+)
C3H/HeJ ENSMUSG00175051982
 gene segment Chr14:43560262-43560751 (+)
C57BL/6NJ ENSMUSG00215049209
 gene segment Chr14:42236380-42236869 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005049195
 gene segment Chr14:44047043-44047531 (+)
CBA/J ENSMUSG00210045709
 gene segment Chr14:42233512-42234001 (+)
DBA/2J ENSMUSG00185056058
 gene segment Chr14:47742155-47742644 (+)
FVB/NJ ENSMUSG00205041713
 gene segment Chr14:42111400-42111700 (+)
JF1/MsJ ENSUMUG00000052215
 gene segment Chr14:59020866-59021355 (+)
LP/J ENSMUSG00230053011
 gene segment Chr14:59834436-59834924 (+)
LP/J ENSMUSG00230053571
 gene segment Chr14:59304161-59304649 (+)
NOD/ShiLtJ ENSMUSG00190047888
 gene segment Chr14:42351583-42351924 (+)
NZO/HlLtJ ENSMUSG00225052775
 gene segment Chr14:49602218-49602706 (+)
NZO/HlLtJ ENSMUSG00225051941
 gene segment Chr14:50132510-50132998 (+)
PWK/PhJ ENSLUMG00010049269
 gene segment Chr14:41446559-41447048 (+)
SPRET/EiJ ENSMSPG00010048979
 gene segment Chr14:45307976-45308465 (+)
WSB/EiJ ENSIUOG00005043784
 gene segment Chr14:41623890-41624378 (+)



Homology
more
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Synonyms
    TCRAV1S4, TCRAV8S3, TRAV83
  • Links
    NCBI Gene ID: 28683
    UniProt: A0A0A6YYJ7

  • Chr Location
    14q11.2; chr14:21852558-21853006 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 630461 NCBI Gene Model | MGI Sequence Detail 433 C57BL/6J ±  kb
polypeptide A0A0B4J1K2 UniProt | EBI | MGI Sequence Detail 113 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
References
more
  • Summaries
    All 13
    Gene Ontology 1
  • Earliest
    J:7998 Hayday AC, et al., Unusual organization and diversity of T-cell receptor alpha-chain genes. Nature. 1985 Aug 29-Sep 4;316(6031):828-32
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory