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Trav9-1 Gene Detail
Summary
  • Symbol
    Trav9-1
  • Name
    T cell receptor alpha variable 9-1
  • Synonyms
    Gm13947
Location &
Maps
more
  • Sequence Map
    Chr14:53725563-53726024 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.39 cM
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650356
 gene segment Chr14:53725502-53726024 (+)
129S1/SvImJ ENSMUSG00200044329
 gene segment Chr14:42253605-42254127 (+)
A/J ENSMUSG00195025996
 gene segment Chr14:42058339-42058855 (+)
AKR/J ENSMUSG00220037369
 gene segment Chr14:41412486-41413002 (+)
BALB/cJ ENSMUSG00180051784
 gene segment Chr14:41680789-41681305 (+)
C3H/HeJ ENSMUSG00175052707
 gene segment Chr14:43363281-43363797 (+)
C57BL/6NJ ENSMUSG00215051141
 gene segment Chr14:42048027-42048549 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005049243
 gene segment Chr14:43867399-43867921 (+)
CBA/J ENSMUSG00210045474
 gene segment Chr14:42036572-42037088 (+)
DBA/2J ENSMUSG00185054376
 gene segment Chr14:46958281-46958803 (+)
FVB/NJ ENSMUSG00205046519
 gene segment Chr14:41375045-41375567 (+)
JF1/MsJ ENSUMUG00000051395
 gene segment Chr14:58810207-58810729 (+)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190046433
 gene segment Chr14:41722427-41722943 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010041210
 gene segment Chr14:41249606-41250122 (+)
SPRET/EiJ ENSMSPG00010048277
 gene segment Chr14:44947503-44948025 (+)
WSB/EiJ ENSIUOG00005043456
 gene segment Chr14:41426466-41426988 (+)



Homology
more
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Synonyms
    TCRAV1S1, TCRAV8S1, TRAV81
  • Links
    NCBI Gene ID: 28685
    UniProt: A0A0A6YYK1

  • Chr Location
    14q11.2; chr14:21797287-21797886 (+)  GRCh38
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Synonyms
    TCRAV1S4, TCRAV8S3, TRAV83
  • Links
    NCBI Gene ID: 28683
    UniProt: A0A0A6YYJ7

  • Chr Location
    14q11.2; chr14:21852558-21853006 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 627324 NCBI Gene Model | MGI Sequence Detail 462 C57BL/6J ±  kb
polypeptide A0A075B601 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory