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Trav6-3 Gene Detail
Summary
  • Symbol
    Trav6-3
  • Name
    T cell receptor alpha variable 6-3
Location &
Maps
more
  • Sequence Map
    Chr14:53666218-53667834 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.36 cM
Strain
Comparison
more
  • SNPs within 2kb
    144 from dbSNP Build 142
  • Strain Annotations
    23
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649610
 gene segment Chr14:53666168-53667834 (+)
129S1/SvImJ ENSMUSG00200043608
 gene segment Chr14:41764176-41765841 (+)
129S1/SvImJ ENSMUSG00200039933
 protein coding gene Chr14:42167969-42169662 (+)
A/J ENSMUSG00195025572
 gene segment Chr14:41997669-41999334 (+)
A/J ENSMUSG00195028989
 protein coding gene Chr14:42403290-42404984 (+)
AKR/J ENSMUSG00220042521
 gene segment Chr14:41351805-41353470 (+)
BALB/cJ ENSMUSG00180047032
 protein coding gene Chr14:42025747-42027442 (+)
BALB/cJ ENSMUSG00180053120
 gene segment Chr14:41620117-41621782 (+)
C3H/HeJ ENSMUSG00175047109
 protein coding gene Chr14:43708221-43709915 (+)
C3H/HeJ ENSMUSG00175051935
 gene segment Chr14:43302615-43304280 (+)
C57BL/6NJ ENSMUSG00215049278
 gene segment Chr14:41988696-41990363 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002220
 gene segment Chr14:44583499-44583799 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210047598
 gene segment Chr14:41975904-41977569 (+)
CBA/J ENSMUSG00210044670
 protein coding gene Chr14:42381454-42383148 (+)
DBA/2J ENSMUSG00185056003
 gene segment Chr14:46897573-46899238 (+)
FVB/NJ ENSMUSG00205048379
 gene segment Chr14:41315160-41316820 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230053584
 gene segment Chr14:59544291-59545983 (+)
LP/J ENSMUSG00230053517
 gene segment Chr14:59138727-59140392 (+)
NOD/ShiLtJ ENSMUSG00190043203
 gene segment Chr14:41662573-41664233 (+)
NZO/HlLtJ ENSMUSG00225052831
 gene segment Chr14:49842343-49844036 (+)
NZO/HlLtJ ENSMUSG00225052450
 gene segment Chr14:49436787-49438452 (+)
PWK/PhJ ENSLUMG00010042397
 gene segment Chr14:41188937-41190602 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005041894
 gene segment Chr14:41371128-41372797 (+)



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 328483 NCBI Gene Model | MGI Sequence Detail 1617 C57BL/6J ±  kb
transcript AK134090 GenBank | ENA | DDBJ | MGI Sequence Detail 1171 C57BL/6J  
polypeptide Q5R1E6 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 14
  • Earliest
    J:86383 Yoshida Y, et al., Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains. J Biol Chem. 2003 Oct 31;278(44):43877-84
  • Latest
    J:225833 Preston GC, et al., Single cell tuning of Myc expression by antigen receptor signal strength and interleukin-2 in T lymphocytes. EMBO J. 2015 Aug 4;34(15):2008-24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory