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Ccdc121rt2 Gene Detail
Summary
  • Symbol
    Ccdc121rt2
  • Name
    coiled-coil domain containing 121, retrogene 2
  • Synonyms
    Gm6588
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648937
    NCBI Gene: 625464
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:112597292-112599604 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 54.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    125 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648937
 protein coding gene Chr5:112597292-112599604 (+)
129S1/SvImJ ENSMUSG00200021285
 protein coding gene Chr5:106338731-106341043 (+)
A/J ENSMUSG00195033433
 protein coding gene Chr5:105847254-105849566 (+)
AKR/J ENSMUSG00220051260
 protein coding gene Chr5:105358069-105360381 (+)
BALB/cJ ENSMUSG00180044669
 protein coding gene Chr5:105989068-105991397 (+)
C3H/HeJ ENSMUSG00175036478
 protein coding gene Chr5:107970515-107972844 (+)
C57BL/6NJ ENSMUSG00215030649
 protein coding gene Chr5:105995760-105998072 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027568
 protein coding gene Chr5:105376250-105378648 (+)
CAST/EiJ ENSTCUG00005021698
 protein coding gene Chr5:105172551-105174875 (+)
CBA/J ENSMUSG00210033392
 protein coding gene Chr5:106722597-106724926 (+)
DBA/2J ENSMUSG00185044296
 protein coding gene Chr5:109757784-109760113 (+)
FVB/NJ ENSMUSG00205050081
 protein coding gene Chr5:105626807-105629136 (+)
JF1/MsJ ENSUMUG00000024751
 protein coding gene Chr5:112610891-112613219 (+)
LP/J ENSMUSG00230048557
 protein coding gene Chr5:113877043-113879355 (+)
NOD/ShiLtJ ENSMUSG00190044539
 protein coding gene Chr5:105662784-105665113 (+)
NZO/HlLtJ ENSMUSG00225024419
 protein coding gene Chr5:121513487-121515816 (+)
PWK/PhJ ENSLUMG00010025229
 protein coding gene Chr5:104521001-104523329 (+)
SPRET/EiJ ENSMSPG00010041091
 protein coding gene Chr5:107779047-107780795 (+)
WSB/EiJ ENSIUOG00005039405
 protein coding gene Chr5:108363556-108365886 (+)



Homology
more
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Links
    NCBI Gene ID: 79635
    UniProt: Q6ZUS5

  • Chr Location
    2p23.3; chr2:27625638-27629012 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 625464 NCBI Gene Model | MGI Sequence Detail 2313 C57BL/6J ±  kb
transcript NM_001177504 RefSeq | MGI Sequence Detail 2313 C57BL/6  
polypeptide NP_001170975 RefSeq | MGI Sequence Detail 461 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032777 Domain of unknown function DUF4515
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:6886234
References
more
  • Summaries
    All 17
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory