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Cstdc3 Gene Detail
Summary
  • Symbol
    Cstdc3
  • Name
    cystatin domain containing 3
  • Synonyms
    Gm4758
Location &
Maps
more
  • Sequence Map
    Chr16:36125719-36133079 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 25.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    206 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648404
 protein coding gene Chr16:36125704-36133092 (+)
129S1/SvImJ ENSMUSG00200029946
 pseudogene Chr16:33206406-33208256 (-)
A/J ENSMUSG00195011507
 pseudogene Chr16:32758081-32759933 (-)
AKR/J ENSMUSG00220030612
 pseudogene Chr16:33010236-33017598 (-)
BALB/cJ ENSMUSG00180013532
 pseudogene Chr16:32973731-32975579 (-)
C3H/HeJ ENSMUSG00175033896
 pseudogene Chr16:33049022-33056410 (+)
C57BL/6NJ ENSMUSG00215026134
 pseudogene Chr16:32896771-32904161 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005033259
 pseudogene Chr16:33313740-33321126 (+)
CBA/J ENSMUSG00210029039
 pseudogene Chr16:33106137-33113523 (+)
DBA/2J ENSMUSG00185024955
 pseudogene Chr16:33009137-33016525 (+)
FVB/NJ ENSMUSG00205028549
 pseudogene Chr16:33105848-33107698 (-)
JF1/MsJ ENSUMUG00000039807
 pseudogene Chr16:33197304-33211019 (+)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190024889
 pseudogene Chr16:33266600-33268446 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010031190
 pseudogene Chr16:33100252-33113955 (+)
SPRET/EiJ ENSMSPG00010017497
 pseudogene Chr16:33039516-33047394 (+)
WSB/EiJ ENSIUOG00005026856
 pseudogene Chr16:33165478-33172864 (+)



Homology
more
  • Human Ortholog
    CSTA, cystatin A
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSTA, cystatin A
  • Synonyms
    AREI, PSS4, STF1, STFA
  • Links
    NCBI Gene ID: 1475
    UniProt: P01040

  • Chr Location
    3q21.1; chr3:122325248-122341969 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CSTA associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      23
    • RefSeq
      4
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 209324 NCBI Gene Model | MGI Sequence Detail 7361 C57BL/6J ±  kb
    transcript XR_876057 RefSeq | MGI Sequence Detail 477 C57BL/6J  
    polypeptide XP_156070 RefSeq | MGI Sequence Detail 98 C57BL/6J  
    For the selected sequence
    Other
    Accession IDs
    less
    MGI:6275073
    References
    more
    • Summaries
      All 8
      Phenotypes 4
    • Earliest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory