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Sox1ot Gene Detail
Summary
  • Symbol
    Sox1ot
  • Name
    Sox1 overlapping transcript
  • Synonyms
    Gm5607
Location &
Maps
more
  • Sequence Map
    Chr8:12435771-12486732 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 5.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1196 from dbSNP Build 142
  • Strain Annotations
    27
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645522
 sense overlapping lncRNA gene Chr8:12373650-12486768 (+)
129S1/SvImJ ENSMUSG00200012733
 lncRNA gene Chr8:9321825-9372983 (+)
A/J ENSMUSG00195011488
 lncRNA gene Chr8:9678765-9729769 (+)
A/J ENSMUSG00195010163
 protein coding gene Chr8:9721551-9728634 (+)
AKR/J ENSMUSG00220011682
 lncRNA gene Chr8:9408006-9459014 (+)
AKR/J ENSMUSG00220010398
 protein coding gene Chr8:9450795-9457879 (+)
BALB/cJ ENSMUSG00180005023
 lncRNA gene Chr8:9317850-9368857 (+)
C3H/HeJ ENSMUSG00175008512
 lncRNA gene Chr8:9477700-9528703 (+)
C3H/HeJ ENSMUSG00175007120
 protein coding gene Chr8:9520485-9527568 (+)
C57BL/6NJ ENSMUSG00215009018
 lncRNA gene Chr8:9352055-9403061 (+)
C57BL/6NJ ENSMUSG00215006549
 protein coding gene Chr8:9394843-9401926 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034653
 sense overlapping lncRNA gene Chr8:8827287-8880016 (+)
CAST/EiJ ENSTCUG00005021720
 lncRNA gene Chr8:9323551-9374656 (+)
CBA/J ENSMUSG00210010529
 protein coding gene Chr8:9354348-9361430 (+)
CBA/J ENSMUSG00210011078
 lncRNA gene Chr8:9311563-9362565 (+)
DBA/2J ENSMUSG00185003282
 protein coding gene Chr8:9487125-9494208 (+)
DBA/2J ENSMUSG00185003987
 lncRNA gene Chr8:9444345-9495343 (+)
FVB/NJ ENSMUSG00205005885
 lncRNA gene Chr8:9337003-9388017 (+)
FVB/NJ ENSMUSG00205004975
 protein coding gene Chr8:9379798-9386882 (+)
JF1/MsJ ENSUMUG00000046637
 lncRNA gene Chr8:9464797-9515883 (+)
LP/J ENSMUSG00230024311
 lncRNA gene Chr8:11623577-11674653 (+)
NOD/ShiLtJ ENSMUSG00190011895
 lncRNA gene Chr8:9436459-9487455 (+)
NOD/ShiLtJ ENSMUSG00190011148
 protein coding gene Chr8:9479237-9486320 (+)
NZO/HlLtJ ENSMUSG00225020062
 lncRNA gene Chr8:19481835-19532989 (+)
PWK/PhJ ENSLUMG00010011317
 lncRNA gene Chr8:9383820-9434860 (+)
SPRET/EiJ ENSMSPG00010017070
 lncRNA gene Chr8:9502072-9554001 (+)
WSB/EiJ ENSIUOG00005005659
 lncRNA gene Chr8:9337099-9388072 (+)



Homology
more
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
  • Synonyms
    LINC00403, uc.357
  • Links
    NCBI Gene ID: 100505996

  • Chr Location
    chr13:111972310-112110570 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    15
Sequences &
Gene Models
less
  • All Sequences
    75
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 434280 NCBI Gene Model | MGI Sequence Detail 50962 C57BL/6J ±  kb
transcript NR_027975 RefSeq | MGI Sequence Detail 5092 C57BL/6  
polypeptide Q6NZL2 UniProt | EBI | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 1
Other
Accession IDs
less
MGI:5904251
References
more
  • Summaries
    All 15
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241993 Ahmad A, et al., Expression of a SOX1 overlapping transcript in neural differentiation and cancer models. Cell Mol Life Sci. 2017 Nov;74(22):4245-4258
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory