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Ct47 Gene Detail
Summary
  • Symbol
    Ct47
  • Name
    cancer/testis antigen 47
  • Synonyms
    Gm6268
Location &
Maps
more
  • Sequence Map
    ChrX:35667130-35668307 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 20.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644556
 protein coding gene ChrX:35664933-35668308 (+)
129S1/SvImJ ENSMUSG00200015277
 protein coding gene ChrX:19772737-19776112 (+)
A/J ENSMUSG00195025095
 protein coding gene ChrX:22444802-22448177 (+)
AKR/J ENSMUSG00220017747
 protein coding gene ChrX:19557051-19560426 (+)
BALB/cJ ENSMUSG00180020673
 protein coding gene ChrX:20003139-20006514 (+)
C3H/HeJ ENSMUSG00175022939
 protein coding gene ChrX:23145320-23148695 (+)
C57BL/6NJ ENSMUSG00215018930
 protein coding gene ChrX:20197132-20200507 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032987
 protein coding gene ChrX:29542876-29544164 (+)
CAST/EiJ ENSTCUG00005030501
 protein coding gene ChrX:22078615-22081992 (+)
CBA/J ENSMUSG00210033103
 protein coding gene ChrX:20439079-20442456 (+)
DBA/2J ENSMUSG00185023939
 protein coding gene ChrX:31022131-31025506 (+)
FVB/NJ ENSMUSG00205018936
 protein coding gene ChrX:19121473-19124848 (+)
JF1/MsJ ENSUMUG00000022721
 protein coding gene ChrX:50150973-50154373 (+)
LP/J ENSMUSG00230013018
 protein coding gene ChrX:37514447-37517822 (+)
NOD/ShiLtJ ENSMUSG00190025216
 protein coding gene ChrX:19711738-19715113 (+)
NZO/HlLtJ ENSMUSG00225039284
 protein coding gene ChrX:42720823-42724198 (+)
PWK/PhJ ENSLUMG00010015878
 protein coding gene ChrX:19860689-19864098 (+)
SPRET/EiJ ENSMSPG00010015206
 protein coding gene ChrX:21085579-21088466 (+)
WSB/EiJ ENSIUOG00005036543
 protein coding gene ChrX:20632162-20635564 (+)



Homology
more
  • Human Ortholog
    CT47A1, cancer/testis antigen family 47 member A1
  • Vertebrate Orthologs
    15
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CT47A1, cancer/testis antigen family 47 member A1
  • Synonyms
    CT47.1
  • Links
    NCBI Gene ID: 728096
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120982476-120985760 (-)  GRCh38
  • Human Ortholog
    CT47A10, cancer/testis antigen family 47 member A10
  • Synonyms
    CT47, CT47.10
  • Links
    NCBI Gene ID: 728036
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120938701-120942023 (-)  GRCh38
  • Human Ortholog
    CT47A11, cancer/testis antigen family 47 member A11
  • Synonyms
    CT47.11
  • Links
    NCBI Gene ID: 255313
    UniProt: Q5JQC4

  • Chr Location
    Xq24
  • Human Ortholog
    CT47A12, cancer/testis antigen family 47 member A12
  • Synonyms
    CT47, CT47.12
  • Links
    NCBI Gene ID: 100507170
    UniProt: Q5JQC4

  • Chr Location
    X
  • Human Ortholog
    CT47A2, cancer/testis antigen family 47 member A2
  • Synonyms
    CT47.2
  • Links
    NCBI Gene ID: 728090
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120977606-120980928 (-)  GRCh38
  • Human Ortholog
    CT47A3, cancer/testis antigen family 47 member A3
  • Synonyms
    CT47.3
  • Links
    NCBI Gene ID: 728082
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120972746-120976068 (-)  GRCh38
  • Human Ortholog
    CT47A4, cancer/testis antigen family 47 member A4
  • Synonyms
    CT47.4
  • Links
    NCBI Gene ID: 728075
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120967886-120971208 (-)  GRCh38
  • Human Ortholog
    CT47A5, cancer/testis antigen family 47 member A5
  • Synonyms
    CT47.5
  • Links
    NCBI Gene ID: 728072
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120963026-120966348 (-)  GRCh38
  • Human Ortholog
    CT47A6, cancer/testis antigen family 47 member A6
  • Synonyms
    CT47.6
  • Links
    NCBI Gene ID: 728062
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120958165-120961487 (-)  GRCh38
  • Human Ortholog
    CT47A7, cancer/testis antigen family 47 member A7
  • Synonyms
    CT47.7
  • Links
    NCBI Gene ID: 653282
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120953282-120956600 (-)  GRCh38
  • Human Ortholog
    CT47A8, cancer/testis antigen family 47 member A8
  • Synonyms
    CT47.8
  • Links
    NCBI Gene ID: 728049
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120948422-120951744 (-)  GRCh38
  • Human Ortholog
    CT47A9, cancer/testis antigen family 47 member A9
  • Synonyms
    CT47.9
  • Links
    NCBI Gene ID: 728042
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120943561-120946883 (-)  GRCh38
  • Human Ortholog
    CT47B1, cancer/testis antigen family 47 member B1
  • Synonyms
    CT47.13, CT47A13
  • Links
    NCBI Gene ID: 643311
    UniProt: P0C2W7

  • Chr Location
    Xq24; chrX:120872607-120875866 (-)  GRCh38
  • Human Ortholog
    CT47C1, cancer/testis antigen family 47 member C1
  • Links
    NCBI Gene ID: 727838
    UniProt: A0A0U1RQG5

  • Chr Location
    Xq24; chrX:119072993-119076768 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 621901 NCBI Gene Model | MGI Sequence Detail 1178 C57BL/6J ±  kb
transcript NM_001436358 RefSeq | MGI Sequence Detail 1459 C57BL/6  
polypeptide NP_001423287 RefSeq | MGI Sequence Detail 297 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR028930 Cancer/testis antigen 47
  • GlyGen
    A2A3U9 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:7444834
References
more
  • Summaries
    All 11
    Phenotypes 3
  • Earliest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory