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Trav6-1 Gene Detail
Summary
  • Symbol
    Trav6-1
  • Name
    T cell receptor alpha variable 6-1
Location &
Maps
more
  • Sequence Map
    Chr14:52875972-52876419 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    34 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644497
 gene segment Chr14:52875972-52876419 (+)
129S1/SvImJ ENSMUSG00200044989
 gene segment Chr14:41681968-41682412 (+)
A/J ENSMUSG00195026674
 gene segment Chr14:41915465-41915909 (+)
AKR/J ENSMUSG00220042791
 gene segment Chr14:41269594-41270038 (+)
BALB/cJ ENSMUSG00180051996
 gene segment Chr14:41537914-41538358 (+)
C3H/HeJ ENSMUSG00175050747
 gene segment Chr14:43220425-43220869 (+)
C57BL/6NJ ENSMUSG00215048720
 gene segment Chr14:41887361-41887808 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002219
 gene segment Chr14:44583355-44583799 (+)
CAST/EiJ ENSTCUG00005049880
 gene segment Chr14:43741293-43741737 (+)
CBA/J ENSMUSG00210046952
 gene segment Chr14:41893706-41894150 (+)
DBA/2J ENSMUSG00185056357
 gene segment Chr14:46815199-46815643 (+)
FVB/NJ ENSMUSG00205047370
 gene segment Chr14:41228377-41228824 (+)
JF1/MsJ ENSUMUG00000053135
 gene segment Chr14:58689966-58690410 (+)
LP/J ENSMUSG00230052843
 gene segment Chr14:59056509-59056953 (+)
NOD/ShiLtJ ENSMUSG00190041934
 gene segment Chr14:41575798-41576245 (+)
NZO/HlLtJ ENSMUSG00225050695
 gene segment Chr14:49354574-49355018 (+)
PWK/PhJ ENSLUMG00010044448
 gene segment Chr14:41106723-41107167 (+)
SPRET/EiJ ENSMSPG00010047025
 gene segment Chr14:44796347-44796791 (+)
WSB/EiJ ENSIUOG00005043526
 gene segment Chr14:41297869-41298313 (+)



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 667449 NCBI Gene Model | MGI Sequence Detail 448 C57BL/6J ±  kb
polypeptide A0A075B5Z8 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory