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Mir542 Gene Detail
Summary
  • Symbol
    Mir542
  • Name
    microRNA 542
  • Synonyms
    mir 542, Mirn542, mmu-mir-542
Location &
Maps
more
  • Sequence Map
    ChrX:52138280-52138364 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.31 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3619431
 miRNA gene ChrX:52138280-52138364 (-)
129S1/SvImJ ENSMUSG00200037916
 miRNA gene ChrX:36039444-36039528 (-)
A/J ENSMUSG00195017751
 miRNA gene ChrX:38810863-38810947 (-)
AKR/J ENSMUSG00220039989
 miRNA gene ChrX:35694334-35694418 (-)
BALB/cJ ENSMUSG00180035166
 miRNA gene ChrX:36530997-36531081 (-)
C3H/HeJ ENSMUSG00175044801
 miRNA gene ChrX:39565604-39565688 (-)
C57BL/6NJ ENSMUSG00215048436
 miRNA gene ChrX:36538726-36538810 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008338
 miRNA gene ChrX:45609033-45609117 (-)
CAST/EiJ ENSTCUG00005038884
 miRNA gene ChrX:38512962-38513046 (-)
CBA/J ENSMUSG00210041160
 miRNA gene ChrX:36789065-36789149 (-)
DBA/2J ENSMUSG00185033519
 miRNA gene ChrX:47493098-47493182 (-)
FVB/NJ ENSMUSG00205030045
 miRNA gene ChrX:35129269-35129353 (-)
JF1/MsJ ENSUMUG00000029484
 miRNA gene ChrX:66527585-66527669 (-)
LP/J ENSMUSG00230029576
 miRNA gene ChrX:54042873-54042957 (-)
NOD/ShiLtJ ENSMUSG00190037413
 miRNA gene ChrX:35902806-35902890 (-)
NZO/HlLtJ ENSMUSG00225043238
 miRNA gene ChrX:59217497-59217581 (-)
PWK/PhJ ENSLUMG00010042434
 miRNA gene ChrX:36213095-36213179 (-)
SPRET/EiJ ENSMSPG00010024564
 miRNA gene ChrX:37924145-37924229 (-)
WSB/EiJ ENSIUOG00005047749
 miRNA gene ChrX:37040190-37040274 (-)



Homology
more
  • Human Ortholog
    MIR542, microRNA 542
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR542, microRNA 542
  • Synonyms
    hsa-mir-542, mir-542, MIRN542
  • Links
    NCBI Gene ID: 664617

  • Chr Location
    chrX:134541341-134541437 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 723901 NCBI Gene Model | MGI Sequence Detail 85 C57BL/6J ±  kb
transcript NR_030264 RefSeq | MGI Sequence Detail 85 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Other 2
Other Database
Links
less
miRBase MI0003522
References
more
  • Summaries
    All 18
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 1
  • Earliest
    J:106122 Sewer A, et al., Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics. 2005;6:267
  • Latest
    J:350800 Liang R, et al., H19X-encoded miR-322(424)/miR-503 regulates muscle mass by targeting translation initiation factors. J Cachexia Sarcopenia Muscle. 2021 Dec;12(6):2174-2186
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory