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Mir541 Gene Detail
Summary
  • Symbol
    Mir541
  • Name
    microRNA 541
  • Synonyms
    mir 541, Mirn541, mmu-mir-541
Location &
Maps
more
  • Sequence Map
    Chr12:109708843-109708932 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 60.56 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3619430
 miRNA gene Chr12:109708843-109708932 (+)
129S1/SvImJ ENSMUSG00200028579
 miRNA gene Chr12:101482611-101482700 (+)
A/J ENSMUSG00195044909
 miRNA gene Chr12:104014526-104014615 (+)
AKR/J ENSMUSG00220040797
 miRNA gene Chr12:101896790-101896879 (+)
BALB/cJ ENSMUSG00180051711
 miRNA gene Chr12:103245768-103245857 (+)
C3H/HeJ ENSMUSG00175048285
 miRNA gene Chr12:105824758-105824847 (+)
C57BL/6NJ ENSMUSG00215050815
 miRNA gene Chr12:102518712-102518801 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007297
 miRNA gene Chr12:104188358-104188447 (+)
CAST/EiJ ENSTCUG00005022397
 miRNA gene Chr12:101997050-101997139 (+)
CBA/J ENSMUSG00210031624
 miRNA gene Chr12:102886223-102886312 (+)
DBA/2J ENSMUSG00185034485
 miRNA gene Chr12:104704742-104704831 (+)
FVB/NJ ENSMUSG00205048086
 miRNA gene Chr12:101930624-101930713 (+)
JF1/MsJ ENSUMUG00000034528
 miRNA gene Chr12:109462849-109462938 (+)
LP/J ENSMUSG00230030594
 miRNA gene Chr12:111747490-111747579 (+)
NOD/ShiLtJ ENSMUSG00190038642
 miRNA gene Chr12:83292487-83292576 (-)
NZO/HlLtJ ENSMUSG00225038210
 miRNA gene Chr12:113506368-113506457 (+)
PWK/PhJ ENSLUMG00010051784
 miRNA gene Chr12:102935381-102935470 (+)
SPRET/EiJ ENSMSPG00010023257
 miRNA gene Chr12:105218404-105218493 (+)
WSB/EiJ ENSIUOG00005009140
 miRNA gene Chr12:101928050-101928139 (+)



Homology
more
  • Human Ortholog
    MIR541, microRNA 541
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR541, microRNA 541
  • Synonyms
    hsa-mir-541, mir-541, MIRN541
  • Links
    NCBI Gene ID: 100126308

  • Chr Location
    chr14:101064495-101064578 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    613
  • Tissues
    9
  • Literature Summary
    6
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 723941 NCBI Gene Model | MGI Sequence Detail 90 C57BL/6J ±  kb
transcript NR_030263 RefSeq | MGI Sequence Detail 90 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    Primer pair 2
    Other 3
Other Database
Links
less
miRBase MI0003521
References
more
  • Summaries
    All 28
    Developmental Gene Expression 6
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:106122 Sewer A, et al., Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics. 2005;6:267
  • Latest
    J:360327 Yu H, et al., Silencing of maternally expressed RNAs in Dlk1-Dio3 domain causes fatal vascular injury in the fetal liver. Cell Mol Life Sci. 2024 Oct 9;81(1):429
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory