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Hhla1 Gene Detail
Summary
  • Symbol
    Hhla1
  • Name
    HERV-H LTR-associating 1
  • Synonyms
    F930104E18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3615329
    NCBI Gene: 654498
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:65794292-65848653 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 29.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1776 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3615329
 protein coding gene Chr15:65788458-65848653 (-)
129S1/SvImJ ENSMUSG00200019198
 protein coding gene Chr15:62825399-62885597 (-)
A/J ENSMUSG00195027195
 protein coding gene Chr15:62939300-62999523 (-)
AKR/J ENSMUSG00220020582
 protein coding gene Chr15:62789010-62849217 (-)
BALB/cJ ENSMUSG00180022229
 protein coding gene Chr15:62755188-62815387 (-)
C3H/HeJ ENSMUSG00175004796
 protein coding gene Chr15:63096312-63161809 (-)
C57BL/6NJ ENSMUSG00215005644
 protein coding gene Chr15:62779989-62840183 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019844
 protein coding gene Chr15:59744367-59785577 (-)
CAST/EiJ ENSTCUG00005019815
 protein coding gene Chr15:62528218-62574284 (-)
CBA/J ENSMUSG00210025069
 protein coding gene Chr15:62873799-62933991 (-)
DBA/2J ENSMUSG00185023691
 protein coding gene Chr15:62816394-62876569 (-)
FVB/NJ ENSMUSG00205009593
 protein coding gene Chr15:62536914-62597108 (-)
JF1/MsJ ENSUMUG00000016128
 protein coding gene Chr15:62531918-62579923 (-)
LP/J ENSMUSG00230023515
 protein coding gene Chr15:66151879-66212072 (-)
NOD/ShiLtJ ENSMUSG00190004105
 protein coding gene Chr15:62865758-62925947 (-)
NZO/HlLtJ ENSMUSG00225026774
 protein coding gene Chr15:66434450-66494646 (-)
PWK/PhJ ENSLUMG00010010118
 protein coding gene Chr15:62840124-62888183 (-)
SPRET/EiJ ENSMSPG00010004390
 protein coding gene Chr15:64177889-64230603 (-)
WSB/EiJ ENSIUOG00005019312
 protein coding gene Chr15:62878686-62938813 (-)



Homology
more
  • Human Ortholog
    HHLA1, HHLA1 neighbor of OC90
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HHLA1, HHLA1 neighbor of OC90
  • Synonyms
    PLA2L
  • Links
    NCBI Gene ID: 10086
    UniProt: C9JL84

  • Chr Location
    8q24.22; chr8:132061480-132111159 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    30 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 654498 NCBI Gene Model | MGI Sequence Detail 54362 C57BL/6J ±  kb
transcript NM_001145096 RefSeq | MGI Sequence Detail 2262 C57BL/6  
polypeptide Q3TYV2 UniProt | EBI | MGI Sequence Detail 514 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 44
    Diseases 1
    Gene Ontology 1
    Phenotypes 30
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory