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Otx2os1 Gene Detail
Summary
  • Symbol
    Otx2os1
  • Name
    orthodenticle homeobox 2 opposite strand 1
Location &
Maps
more
  • Sequence Map
    Chr14:48906745-49030805 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 25.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2879 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583292
 lncRNA gene Chr14:48906165-49109111 (+)
129S1/SvImJ ENSMUSG00200017319
 lncRNA gene Chr14:37743888-37947919 (+)
A/J ENSMUSG00195025695
 lncRNA gene Chr14:37949991-38154385 (+)
AKR/J ENSMUSG00220040890
 lncRNA gene Chr14:37324397-37528918 (+)
BALB/cJ ENSMUSG00180048024
 lncRNA gene Chr14:37558254-37761998 (+)
C3H/HeJ ENSMUSG00175029289
 lncRNA gene Chr14:39238627-39442720 (+)
C57BL/6NJ ENSMUSG00215039624
 lncRNA gene Chr14:37928093-38131424 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005035
 lincRNA gene Chr14:40519206-40643711 (+)
CAST/EiJ ENSTCUG00005011029
 lncRNA gene Chr14:39730218-39935488 (+)
CBA/J ENSMUSG00210043504
 lncRNA gene Chr14:37883750-38087627 (+)
DBA/2J ENSMUSG00185056345
 lncRNA gene Chr14:42657672-42861738 (+)
FVB/NJ ENSMUSG00205047202
 lncRNA gene Chr14:37086870-37293384 (+)
JF1/MsJ ENSUMUG00000054035
 lncRNA gene Chr14:54703911-54906930 (+)
LP/J ENSMUSG00230053212
 lncRNA gene Chr14:54912457-55115850 (+)
NOD/ShiLtJ ENSMUSG00190047814
 lncRNA gene Chr14:37561045-37765833 (+)
NZO/HlLtJ ENSMUSG00225052304
 lncRNA gene Chr14:45179564-45384952 (+)
PWK/PhJ ENSLUMG00010041019
 lncRNA gene Chr14:37156423-37360124 (+)
SPRET/EiJ ENSMSPG00010003354
 lncRNA gene Chr14:40509225-40705928 (+)
WSB/EiJ ENSIUOG00005040639
 lncRNA gene Chr14:37452496-37656075 (+)



Homology
more
  • Human Ortholog
    OTX2-AS1, OTX2 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OTX2-AS1, OTX2 antisense RNA 1
  • Synonyms
    OTX2OS1
  • Links
    NCBI Gene ID: 100309464

  • Chr Location
    chr14:56812006-57152177 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    607
  • Tissues
    10
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    80
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 606497 NCBI Gene Model | MGI Sequence Detail 124061 C57BL/6J ±  kb
transcript NR_029384 RefSeq | MGI Sequence Detail 743 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 2
    Primer pair 1
References
more
  • Summaries
    All 12
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory