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Xlr4c Gene Detail
Summary
  • Symbol
    Xlr4c
  • Name
    X-linked lymphocyte-regulated 4C
  • Synonyms
    2900036K24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3574099
    NCBI Gene: 72891
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72277682-72286736 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3574099
 protein coding gene ChrX:72277294-72286736 (-)
129S1/SvImJ ENSMUSG00200041281
 protein coding gene ChrX:54337464-54346906 (-)
A/J ENSMUSG00195033117
 protein coding gene ChrX:58020682-58030115 (-)
AKR/J no annotation
BALB/cJ ENSMUSG00180046829
 protein coding gene ChrX:54601420-54610853 (-)
C3H/HeJ ENSMUSG00175031417
 protein coding gene ChrX:58185108-58194541 (-)
C57BL/6NJ ENSMUSG00215041065
 protein coding gene ChrX:54678391-54687833 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005041804
 protein coding gene ChrX:56097809-56107303 (-)
CBA/J ENSMUSG00210041364
 protein coding gene ChrX:54865772-54875205 (-)
DBA/2J ENSMUSG00185032819
 protein coding gene ChrX:67287432-67296866 (-)
FVB/NJ no annotation
JF1/MsJ no annotation
LP/J ENSMUSG00230036472
 protein coding gene ChrX:73859677-73869119 (-)
NOD/ShiLtJ ENSMUSG00190041870
 protein coding gene ChrX:54105794-54115227 (-)
NZO/HlLtJ ENSMUSG00225048081
 protein coding gene ChrX:79064013-79073455 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005045884
 protein coding gene ChrX:54941300-54950737 (-)



Homology
more
  • Human Ortholog
    FAM9A, family with sequence similarity 9 member A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM9A, family with sequence similarity 9 member A
  • Synonyms
    TEX39A
  • Links
    NCBI Gene ID: 171482
    UniProt: Q8IZU1

  • Chr Location
    Xp22.31; chrX:8790795-8801383 (-)  GRCh38
  • Human Ortholog
    FAM9C, family with sequence similarity 9 member C
  • Synonyms
    TEX39C
  • Links
    NCBI Gene ID: 171484
    UniProt: Q8IZT9

  • Chr Location
    Xp22.2; chrX:13035617-13044682 (-)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    665
  • Tissues
    26
  • cDNA Data
    5
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72891 NCBI Gene Model | MGI Sequence Detail 9055 C57BL/6J ±  kb
transcript NM_183094 RefSeq | MGI Sequence Detail 1247 C57BL/6  
polypeptide NP_898917 RefSeq | MGI Sequence Detail 215 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
    IPR006888 XLR/SYCP3/FAM9 domain
Molecular
Reagents
less
  • All nucleic 8
    cDNA 6
    Primer pair 2

    Microarray probesets 2
Other
Accession IDs
less
MGI:1920141
References
more
  • Summaries
    All 19
    Developmental Gene Expression 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:310975 He N, et al., At Term, XmO and XpO Mouse Placentas Show Differences in Glucose Metabolism in the Trophectoderm-Derived Outer Zone. Front Cell Dev Biol. 2017;5:63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory