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Smim40 Gene Detail
Summary
  • Symbol
    Smim40
  • Name
    small integral membrane protein 40
  • Synonyms
    BC033916, Platr17
  • Feature Type
    protein coding gene
  • IDs
    MGI:3054967
    NCBI Gene: 474160
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:34124109-34125649 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 17.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3054967
 protein coding gene Chr17:34112180-34125654 (+)
129S1/SvImJ ENSMUSG00200049528
 protein coding gene Chr17:29827020-29828562 (+)
A/J ENSMUSG00195035165
 protein coding gene Chr17:30691319-30692868 (+)
AKR/J ENSMUSG00220045802
 protein coding gene Chr17:29718962-29720510 (+)
BALB/cJ ENSMUSG00180034707
 protein coding gene Chr17:30077787-30079289 (+)
C3H/HeJ ENSMUSG00175052143
 protein coding gene Chr17:29605164-29606712 (+)
C57BL/6NJ ENSMUSG00215054067
 protein coding gene Chr17:29667183-29668724 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005201
 lincRNA gene Chr17:30190286-30191453 (+)
CAST/EiJ ENSTCUG00005040229
 protein coding gene Chr17:30648874-30650410 (+)
CBA/J ENSMUSG00210046347
 protein coding gene Chr17:29427258-29428807 (+)
DBA/2J ENSMUSG00185045752
 protein coding gene Chr17:32097097-32098600 (+)
FVB/NJ ENSMUSG00205047322
 protein coding gene Chr17:29955263-29956808 (+)
JF1/MsJ ENSUMUG00000056870
 protein coding gene Chr17:31359757-31361266 (+)
LP/J ENSMUSG00230053095
 protein coding gene Chr17:33225374-33226914 (+)
NOD/ShiLtJ ENSMUSG00190052185
 protein coding gene Chr17:29577418-29578961 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010034446
 protein coding gene Chr17:29203229-29204711 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005049177
 protein coding gene Chr17:30280135-30281605 (+)



Homology
more
  • Human Ortholog
    SMIM40, small integral membrane protein 40
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM40, small integral membrane protein 40
  • Links
    NCBI Gene ID: 113523636
    UniProt: Q5STR5

  • Chr Location
    6p21.32; chr6:33323628-33329279 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    620
  • Tissues
    18
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000092349 Ensembl Gene Model | MGI Sequence Detail 1541 C57BL/6J ±  kb
transcript ENSMUST00000172817 Ensembl | MGI Sequence Detail 807 Not Applicable  
polypeptide ENSMUSP00000154114 Ensembl | MGI Sequence Detail 81 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR062398 Small integral membrane protein 40
Molecular
Reagents
less
  • All nucleic 5
    cDNA 4
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:6284520
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
    Phenotypes 4
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory