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Gm1140 Gene Detail
Summary
  • Symbol
    Gm1140
  • Name
    predicted gene 1140
  • Synonyms
    LOC382217
Location &
Maps
more
  • Sequence Map
    ChrX:66726506-66737168 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.81 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    60 from dbSNP Build 142
  • Strain Annotations
    24
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685986
 protein coding gene ChrX:66725827-66738064 (-)
129S1/SvImJ ENSMUSG00200015850
 protein coding gene ChrX:48866470-48877132 (-)
129S1/SvImJ ENSMUSG00200015825
 protein coding gene ChrX:48879268-48889918 (+)
A/J ENSMUSG00195033590
 protein coding gene ChrX:52445787-52456419 (-)
A/J ENSMUSG00195034709
 protein coding gene ChrX:52458556-52469195 (+)
AKR/J ENSMUSG00220023989
 protein coding gene ChrX:47774714-47785368 (+)
AKR/J ENSMUSG00220023974
 protein coding gene ChrX:47761915-47772577 (-)
BALB/cJ ENSMUSG00180006694
 protein coding gene ChrX:49060375-49071007 (-)
BALB/cJ ENSMUSG00180006702
 protein coding gene ChrX:49073144-49083779 (+)
C3H/HeJ ENSMUSG00175009110
 protein coding gene ChrX:52624225-52634857 (-)
C3H/HeJ ENSMUSG00175009122
 protein coding gene ChrX:52636993-52647628 (+)
C57BL/6NJ ENSMUSG00215007527
 protein coding gene ChrX:49109465-49120126 (-)
C57BL/6NJ ENSMUSG00215007547
 protein coding gene ChrX:49122263-49132915 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J ENSMUSG00210018519
 protein coding gene ChrX:49326606-49337250 (+)
CBA/J ENSMUSG00210018513
 protein coding gene ChrX:49313807-49324469 (-)
DBA/2J ENSMUSG00185030046
 protein coding gene ChrX:61781131-61791785 (+)
DBA/2J ENSMUSG00185030033
 protein coding gene ChrX:61768331-61778993 (-)
FVB/NJ ENSMUSG00205008831
 protein coding gene ChrX:48869798-48880457 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230018418
 protein coding gene ChrX:68344394-68355045 (+)
LP/J ENSMUSG00230018357
 protein coding gene ChrX:68331603-68342257 (-)
NOD/ShiLtJ ENSMUSG00190012565
 protein coding gene ChrX:48649562-48660222 (-)
NOD/ShiLtJ ENSMUSG00190012575
 protein coding gene ChrX:48662359-48673011 (+)
NZO/HlLtJ ENSMUSG00225046424
 protein coding gene ChrX:73523253-73533891 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005011881
 protein coding gene ChrX:49587759-49598416 (-)



Homology
more
  • Human Ortholog
    FAM9A, family with sequence similarity 9 member A
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM9A, family with sequence similarity 9 member A
  • Synonyms
    TEX39A
  • Links
    NCBI Gene ID: 171482
    UniProt: Q8IZU1

  • Chr Location
    Xp22.31; chrX:8790795-8801383 (-)  GRCh38
  • Human Ortholog
    FAM9C, family with sequence similarity 9 member C
  • Synonyms
    TEX39C
  • Links
    NCBI Gene ID: 171484
    UniProt: Q8IZT9

  • Chr Location
    Xp22.2; chrX:13035617-13044682 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype reference
Knockout does not affect spermatogenesis or male fertility.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000079578 Ensembl Gene Model | MGI Sequence Detail 10663 C57BL/6J ±  kb
    transcript ENSMUST00000114675 Ensembl | MGI Sequence Detail 782 Not Applicable  
    polypeptide ENSMUSP00000110323 Ensembl | MGI Sequence Detail 229 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • InterPro Domains
      IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
      IPR006888 XLR/SYCP3/FAM9 domain
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3
    References
    more
    • Summaries
      All 12
      Phenotypes 1
    • Earliest
      J:356355 Gallardo TD, et al., Genomewide discovery and classification of candidate ovarian fertility genes in the mouse. Genetics. 2007 Sep;177(1):179-94
    • Latest
      J:292550 Morimoto K, et al., Reverse genetics reveals single gene of every candidate on Hybrid sterility, X Chromosome QTL 2 (Hstx2) are dispensable for spermatogenesis. Sci Rep. 2020 Jun 3;10(1):9060
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory