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Spef1l Gene Detail
Summary
  • Symbol
    Spef1l
  • Name
    sperm flagellar 1 like
  • Synonyms
    6430531B16Rik, LOC381933
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685939
    NCBI Gene: 381933
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:139552216-139558668 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 84.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685939
 protein coding gene Chr7:139552211-139558668 (-)
129S1/SvImJ ENSMUSG00200042454
 protein coding gene Chr7:126114180-126123427 (-)
A/J ENSMUSG00195031868
 protein coding gene Chr7:130596588-130605794 (-)
AKR/J ENSMUSG00220033465
 protein coding gene Chr7:124075318-124083126 (-)
BALB/cJ ENSMUSG00180032488
 protein coding gene Chr7:127288838-127298043 (-)
C3H/HeJ ENSMUSG00175032783
 protein coding gene Chr7:128017121-128026328 (-)
C57BL/6NJ ENSMUSG00215042750
 protein coding gene Chr7:127283565-127292810 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030623
 protein coding gene Chr7:142055628-142062292 (-)
CAST/EiJ ENSTCUG00005046824
 protein coding gene Chr7:130574845-130590133 (-)
CBA/J ENSMUSG00210026691
 protein coding gene Chr7:127750766-127758585 (-)
DBA/2J ENSMUSG00185015799
 protein coding gene Chr7:132053660-132062859 (-)
FVB/NJ ENSMUSG00205020038
 protein coding gene Chr7:127733840-127749534 (-)
JF1/MsJ ENSUMUG00000045429
 protein coding gene Chr7:137137895-137145703 (-)
LP/J ENSMUSG00230037774
 protein coding gene Chr7:138217220-138226421 (-)
NOD/ShiLtJ ENSMUSG00190018823
 protein coding gene Chr7:127882549-127891796 (-)
NZO/HlLtJ ENSMUSG00225051364
 protein coding gene Chr7:136427808-136435639 (-)
PWK/PhJ ENSLUMG00010034811
 protein coding gene Chr7:126285422-126293228 (-)
SPRET/EiJ ENSMSPG00010035466
 protein coding gene Chr7:127643675-127650108 (-)
WSB/EiJ ENSIUOG00005030916
 protein coding gene Chr7:128571575-128579393 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    6
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073795 Ensembl Gene Model | MGI Sequence Detail 6453 C57BL/6J ±  kb
transcript ENSMUST00000097970 Ensembl | MGI Sequence Detail 1161 Not Applicable  
polypeptide ENSMUSP00000095584 Ensembl | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR001715 Calponin homology domain
    IPR036872 CH domain superfamily
    IPR010441 CH-like domain in sperm protein
    IPR052111 Spermatogenesis and Ciliary Microtubule-associated Protein
  • GlyGen
    Q3V2J1 1 site
Molecular
Reagents
less
  • All nucleic 7
    Genomic 1
    cDNA 6

    Microarray probesets 1
Other
Accession IDs
less
MGI:6331223
References
more
  • Summaries
    All 22
    Phenotypes 9
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory