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Ccdc121rt1 Gene Detail
Summary
  • Symbol
    Ccdc121rt1
  • Name
    coiled-coil domain containing 121, retrogene 1
  • Synonyms
    6530421E24Rik, Ccdc121, LOC329308
Location &
Maps
more
  • Sequence Map
    Chr1:181337198-181339016 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 84.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    174 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685601
 protein coding gene Chr1:181337198-181339016 (-)
129S1/SvImJ ENSMUSG00200022039
 protein coding gene Chr1:179091123-179092941 (-)
A/J ENSMUSG00195038560
 protein coding gene Chr1:178694350-178696168 (-)
AKR/J ENSMUSG00220019606
 protein coding gene Chr1:177936053-177937871 (-)
BALB/cJ ENSMUSG00180034996
 protein coding gene Chr1:178742399-178744217 (-)
C3H/HeJ ENSMUSG00175033073
 protein coding gene Chr1:178918150-178919968 (-)
C57BL/6NJ ENSMUSG00215017897
 protein coding gene Chr1:178143880-178145698 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014993
 protein coding gene Chr1:171381335-171383203 (-)
CAST/EiJ ENSTCUG00005041608
 protein coding gene Chr1:176663804-176672882 (-)
CBA/J ENSMUSG00210018644
 protein coding gene Chr1:178582153-178583972 (-)
DBA/2J ENSMUSG00185035101
 protein coding gene Chr1:183201560-183203379 (-)
FVB/NJ ENSMUSG00205032939
 protein coding gene Chr1:177638746-177640564 (-)
JF1/MsJ ENSUMUG00000003690
 protein coding gene Chr1:182182439-182184161 (-)
LP/J ENSMUSG00230027626
 protein coding gene Chr1:182750423-182752241 (-)
NOD/ShiLtJ ENSMUSG00190027075
 protein coding gene Chr1:178603981-178605799 (-)
NZO/HlLtJ ENSMUSG00225010895
 protein coding gene Chr1:186503120-186504938 (-)
PWK/PhJ ENSLUMG00010015702
 protein coding gene Chr1:177451267-177453085 (-)
SPRET/EiJ ENSMSPG00010031129
 protein coding gene Chr1:180919865-180921184 (-)
WSB/EiJ ENSIUOG00005010675
 protein coding gene Chr1:177803721-177805539 (-)



Homology
more
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Links
    NCBI Gene ID: 79635
    UniProt: Q6ZUS5

  • Chr Location
    2p23.3; chr2:27625638-27629012 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 403180 NCBI Gene Model | MGI Sequence Detail 1819 C57BL/6J ±  kb
transcript NM_207280 RefSeq | MGI Sequence Detail 1835 C57BL/6  
polypeptide NP_997163 RefSeq | MGI Sequence Detail 323 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032777 Domain of unknown function DUF4515
  • GlyGen
    E9Q6D3 1 site
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:6886233
References
more
  • Summaries
    All 16
    Phenotypes 3
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory