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Col23a1 Gene Detail
Summary
  • Symbol
    Col23a1
  • Name
    collagen, type XXIII, alpha 1
  • Synonyms
    2810458L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2653243
    NCBI Gene: 237759
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:51180747-51474745 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 31.03 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8938 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2653243
 protein coding gene Chr11:51180508-51474752 (+)
129S1/SvImJ ENSMUSG00200040025
 protein coding gene Chr11:48167704-48467552 (+)
A/J ENSMUSG00195030482
 protein coding gene Chr11:48110730-48404796 (+)
AKR/J ENSMUSG00220031834
 protein coding gene Chr11:48299575-48593663 (+)
BALB/cJ ENSMUSG00180030948
 protein coding gene Chr11:48172160-48466215 (+)
C3H/HeJ ENSMUSG00175036441
 protein coding gene Chr11:48142255-48436319 (+)
C57BL/6NJ ENSMUSG00215034294
 protein coding gene Chr11:48043647-48337713 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016309
 protein coding gene Chr11:46195409-46482872 (+)
CAST/EiJ ENSTCUG00005038972
 protein coding gene Chr11:47738676-48031958 (+)
CBA/J ENSMUSG00210029142
 protein coding gene Chr11:47998249-48292266 (+)
DBA/2J ENSMUSG00185025642
 protein coding gene Chr11:48207341-48498791 (+)
FVB/NJ ENSMUSG00205020492
 protein coding gene Chr11:48040590-48334629 (+)
JF1/MsJ ENSUMUG00000023389
 protein coding gene Chr11:48562459-48863756 (+)
LP/J ENSMUSG00230030771
 protein coding gene Chr11:49391487-49685473 (+)
NOD/ShiLtJ ENSMUSG00190033895
 protein coding gene Chr11:48271130-48571909 (+)
NZO/HlLtJ ENSMUSG00225030938
 protein coding gene Chr11:51419620-51720834 (+)
PWK/PhJ ENSLUMG00010026139
 protein coding gene Chr11:48030057-48324180 (+)
SPRET/EiJ ENSMSPG00010017673
 protein coding gene Chr11:48690695-48989777 (+)
WSB/EiJ ENSIUOG00005034485
 protein coding gene Chr11:48059571-48357112 (+)



Homology
more
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1 chain
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1 chain
  • Links
    NCBI Gene ID: 91522
    UniProt: Q86Y22

  • Chr Location
    5q35.3; chr5:178237476-178590393 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    768
  • Tissues
    117
  • cDNA Data
    34
  • Literature Summary
    12
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063564 Ensembl Gene Model | MGI Sequence Detail 293999 C57BL/6J ±  kb
transcript ENSMUST00000102765 Ensembl | MGI Sequence Detail 5658 Not Applicable  
polypeptide ENSMUSP00000099826 Ensembl | MGI Sequence Detail 532 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    Genomic 2
    cDNA 36
    Primer pair 3
    Antibodies 2

    Microarray probesets 6
Other
Accession IDs
less
MGI:1920044, MGI:2144160
References
more
  • Summaries
    All 49
    Developmental Gene Expression 12
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:332240 Feng W, et al., Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages. Nat Commun. 2022 Dec 27;13(1):7960
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory