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H2ac20 Gene Detail
Summary
  • Symbol
    H2ac20
  • Name
    H2A clustered histone 20
  • Synonyms
    H2a-613b, Hist2h2ac
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448316
    NCBI Gene: 319176
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:96127728-96128209 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 41.67 cM, cytoband F1-F2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    97 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448316
 protein coding gene Chr3:96127677-96128209 (-)
129S1/SvImJ ENSMUSG00200040017
 protein coding gene Chr3:92795798-92796317 (-)
A/J ENSMUSG00195041010
 protein coding gene Chr3:93124108-93124627 (-)
AKR/J ENSMUSG00220033165
 protein coding gene Chr3:91506913-91507432 (-)
BALB/cJ ENSMUSG00180035992
 protein coding gene Chr3:93115695-93116214 (-)
C3H/HeJ ENSMUSG00175029035
 protein coding gene Chr3:92753731-92754250 (-)
C57BL/6NJ ENSMUSG00215013491
 protein coding gene Chr3:93482832-93483351 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025369
 protein coding gene Chr3:90306759-90307277 (-)
CAST/EiJ ENSTCUG00005018633
 protein coding gene Chr3:93310455-93310974 (-)
CBA/J ENSMUSG00210051076
 protein coding gene Chr3:93305459-93305978 (-)
DBA/2J ENSMUSG00185037108
 protein coding gene Chr3:93723872-93724391 (-)
FVB/NJ ENSMUSG00205047888
 protein coding gene Chr3:92406347-92406866 (-)
JF1/MsJ ENSUMUG00000021382
 protein coding gene Chr3:92599565-92600084 (-)
LP/J ENSMUSG00230043879
 protein coding gene Chr3:95659169-95659688 (-)
NOD/ShiLtJ ENSMUSG00190035838
 protein coding gene Chr3:93825874-93826393 (-)
NZO/HlLtJ ENSMUSG00225009216
 protein coding gene Chr3:98077833-98078352 (-)
PWK/PhJ ENSLUMG00010025589
 protein coding gene Chr3:92579206-92579725 (-)
SPRET/EiJ ENSMSPG00010043249
 protein coding gene Chr3:92884246-92884765 (-)
WSB/EiJ ENSIUOG00005026410
 protein coding gene Chr3:93226132-93226651 (-)



Homology
more
  • Human Ortholog
    H2AC20, H2A clustered histone 20
  • Vertebrate Orthologs
    26
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2AC20, H2A clustered histone 20
  • Synonyms
    H2A, H2AFQ, H2A-GL101, H2A/q, HIST2H2AC
  • Links
    NCBI Gene ID: 8338
    UniProt: Q16777

  • Chr Location
    1q21.2; chr1:149886918-149887411 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H2ac20
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 319176 NCBI Gene Model | MGI Sequence Detail 482 C57BL/6J ±  kb
transcript NM_175662 RefSeq | MGI Sequence Detail 482 C57BL/6  
polypeptide Q64523 UniProt | EBI | MGI Sequence Detail 129 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:6325019
References
more
  • Summaries
    All 24
    Diseases 1
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:34961 Wang ZF, et al., Characterization of the 55-kb mouse histone gene cluster on chromosome 3. Genome Res. 1996 Aug;6(8):702-14
  • Latest
    J:306626 Wang X, et al., DDB1 binds histone reader BRWD3 to activate the transcriptional cascade in adipogenesis and promote onset of obesity. Cell Rep. 2021 Jun 22;35(12):109281
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory