About   Help   FAQ
Pcnx2 Gene Detail
Summary
  • Symbol
    Pcnx2
  • Name
    pecanex homolog 2
  • Synonyms
    E330039K12Rik, Pcnxl2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445010
    NCBI Gene: 270109
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:126478247-126625056 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 73.65 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4942 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445010
 protein coding gene Chr8:126478243-126625056 (-)
129S1/SvImJ ENSMUSG00200004757
 protein coding gene Chr8:120732368-120879345 (-)
A/J ENSMUSG00195003571
 protein coding gene Chr8:121007502-121154474 (-)
AKR/J ENSMUSG00220001668
 protein coding gene Chr8:121195397-121342363 (-)
BALB/cJ ENSMUSG00180000888
 protein coding gene Chr8:121052308-121199285 (-)
C3H/HeJ ENSMUSG00175005157
 protein coding gene Chr8:121123742-121276015 (-)
C57BL/6NJ ENSMUSG00215000693
 protein coding gene Chr8:120711121-120858080 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031723
 protein coding gene Chr8:116894294-117040242 (-)
CAST/EiJ ENSTCUG00005030017
 protein coding gene Chr8:120448214-120595672 (-)
CBA/J ENSMUSG00210014050
 protein coding gene Chr8:121042697-121189654 (-)
DBA/2J ENSMUSG00185035906
 protein coding gene Chr8:127361699-127508652 (-)
FVB/NJ ENSMUSG00205020973
 protein coding gene Chr8:120010331-120157298 (-)
JF1/MsJ ENSUMUG00000034402
 protein coding gene Chr8:129553296-129699868 (-)
LP/J ENSMUSG00230006180
 protein coding gene Chr8:130914939-131061896 (-)
NOD/ShiLtJ ENSMUSG00190006414
 protein coding gene Chr8:121161886-121308831 (-)
NZO/HlLtJ ENSMUSG00225018830
 protein coding gene Chr8:134274412-134421339 (-)
PWK/PhJ ENSLUMG00010034642
 protein coding gene Chr8:120838057-120985183 (-)
SPRET/EiJ ENSMSPG00010001636
 protein coding gene Chr8:123023357-123169770 (-)
WSB/EiJ ENSIUOG00005003021
 protein coding gene Chr8:121820645-121966463 (-)



Homology
more
  • Human Ortholog
    PCNX2, pecanex 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCNX2, pecanex 2
  • Synonyms
    PCNXL2
  • Links
    NCBI Gene ID: 80003
    UniProt: A6NKB5

  • Chr Location
    1q42.2; chr1:232983435-233327329 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    20
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000060212 Ensembl Gene Model | MGI Sequence Detail 146810 C57BL/6J ±  kb
    transcript ENSMUST00000047239 Ensembl | MGI Sequence Detail 7236 Not Applicable  
    polypeptide ENSMUSP00000042294 Ensembl | MGI Sequence Detail 2122 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2142724
    References
    more
    • Summaries
      All 28
      Gene Ontology 2
      Phenotypes 7
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory