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Abca15 Gene Detail
Summary
  • Symbol
    Abca15
  • Name
    ATP-binding cassette, sub-family A member 15
  • Synonyms
    4930500I12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2388709
    NCBI Gene: 320631
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:119927893-120006910 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 64.72 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2119 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2388709
 protein coding gene Chr7:119927709-120006925 (+)
129S1/SvImJ ENSMUSG00200021643
 protein coding gene Chr7:106448514-106527544 (+)
A/J ENSMUSG00195035715
 protein coding gene Chr7:110979839-110980605 (+)
AKR/J ENSMUSG00220025160
 protein coding gene Chr7:104412679-104413445 (+)
BALB/cJ ENSMUSG00180029460
 protein coding gene Chr7:107643602-107644368 (+)
C3H/HeJ ENSMUSG00175023823
 protein coding gene Chr7:108357130-108357896 (+)
C57BL/6NJ ENSMUSG00215036812
 protein coding gene Chr7:107607157-107607923 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030394
 protein coding gene Chr7:122466693-122543812 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210023298
 protein coding gene Chr7:108079558-108080324 (+)
DBA/2J ENSMUSG00185034953
 protein coding gene Chr7:112430704-112431470 (+)
FVB/NJ ENSMUSG00205041696
 protein coding gene Chr7:108064642-108065408 (+)
JF1/MsJ ENSUMUG00000019081
 protein coding gene Chr7:117482109-117578889 (+)
LP/J ENSMUSG00230032146
 protein coding gene Chr7:118538681-118539447 (+)
NOD/ShiLtJ ENSMUSG00190017174
 protein coding gene Chr7:108283427-108284193 (+)
NZO/HlLtJ ENSMUSG00225039233
 protein coding gene Chr7:116788977-116789743 (+)
PWK/PhJ no annotation
SPRET/EiJ ENSMSPG00010007279
 protein coding gene Chr7:107835204-107911833 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    ABCA15P, ATP binding cassette subfamily A member 15, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABCA15P, ATP binding cassette subfamily A member 15, pseudogene
  • Synonyms
    ABCA15P1, CRYM-AS1, NCRNA00169
  • Links
    NCBI Gene ID: 400508

  • Chr Location
    16p12.2; chr16:21300849-21339037 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    617
  • Tissues
    12
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054746 Ensembl Gene Model | MGI Sequence Detail 79018 C57BL/6J ±  kb
transcript ENSMUST00000076272 Ensembl | MGI Sequence Detail 5335 Not Applicable  
polypeptide ENSMUSP00000075621 Ensembl | MGI Sequence Detail 1668 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR003593 AAA+ ATPase domain
    IPR013525 ABC-2 type transporter, transmembrane domain
    IPR056264 ABCA1-4-like, C-terminal R2 regulatory domain
    IPR026082 ABC transporter A
    IPR003439 ABC transporter-like, ATP-binding domain
    IPR017871 ABC transporter-like, conserved site
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2444399
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:202604 Nagamachi A, et al., Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Cancer Cell. 2013 Sep 9;24(3):305-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory