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Rnu11 Gene Detail
Summary
  • Symbol
    Rnu11
  • Name
    U11 small nuclear RNA
  • Synonyms
    MBII-407
Location &
Maps
more
  • Sequence Map
    Chr4:131997390-131997497 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2148804
 snRNA gene Chr4:131997390-131997524 (-)
129S1/SvImJ ENSMUSG00200021653
 snRNA gene Chr4:125451883-125452016 (-)
A/J ENSMUSG00195044764
 snRNA gene Chr4:126776488-126776621 (-)
AKR/J ENSMUSG00220048528
 snRNA gene Chr4:125768243-125768376 (-)
BALB/cJ ENSMUSG00180049438
 snRNA gene Chr4:124410240-124410373 (-)
C3H/HeJ ENSMUSG00175049264
 snRNA gene Chr4:125422630-125422763 (-)
C57BL/6NJ ENSMUSG00215052245
 snRNA gene Chr4:126926552-126926685 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0035322
 snRNA gene Chr4:121903207-121903340 (-)
CAST/EiJ ENSTCUG00005048961
 snRNA gene Chr4:126319175-126319308 (-)
CBA/J ENSMUSG00210054032
 snRNA gene Chr4:125051600-125051733 (-)
DBA/2J ENSMUSG00185052786
 snRNA gene Chr4:126584011-126584144 (-)
FVB/NJ ENSMUSG00205047925
 snRNA gene Chr4:124825354-124825487 (-)
JF1/MsJ ENSUMUG00000048027
 snRNA gene Chr4:127249842-127249975 (-)
LP/J ENSMUSG00230038726
 snRNA gene Chr4:130390368-130390501 (-)
NOD/ShiLtJ ENSMUSG00190048419
 snRNA gene Chr4:124816321-124816454 (-)
NZO/HlLtJ ENSMUSG00225026650
 snRNA gene Chr4:136294635-136294768 (-)
PWK/PhJ ENSLUMG00010051348
 snRNA gene Chr4:124269472-124269605 (-)
SPRET/EiJ ENSMSPG00010046065
 snRNA gene Chr4:126342436-126342569 (-)
WSB/EiJ ENSIUOG00005044473
 snRNA gene Chr4:124704887-124705020 (-)



Homology
more
  • Human Ortholog
    RNU11, RNA, U11 small nuclear
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNU11, RNA, U11 small nuclear
  • Synonyms
    RNU11-1, U11
  • Links
    NCBI Gene ID: 26824

  • Chr Location
    1p35.3; chr1:28648600-28648734 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous constitutive knockout is embryonic lethal. Conditional knockout in the pallium causes microcephaly.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    670
  • Tissues
    33
  • cDNA Data
    1
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      24
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 353373 NCBI Gene Model | MGI Sequence Detail 108 C57BL/6J ±  kb
    transcript NR_002865 RefSeq | MGI Sequence Detail 108 Not Specified  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 1
      Primer pair 1
      Other 2
    References
    more
    • Summaries
      All 19
      Developmental Gene Expression 5
      Gene Ontology 2
      Phenotypes 7
    • Earliest
      J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
    • Latest
      J:319558 Bizen N, et al., Ddx20, an Olig2 binding factor, governs the survival of neural and oligodendrocyte progenitor cells via proper Mdm2 splicing and p53 suppression. Cell Death Differ. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory