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Clmn Gene Detail
Summary
  • Symbol
    Clmn
  • Name
    calmin
  • Synonyms
    9330188N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136957
    NCBI Gene: 94040
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:104729376-104831335 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 54.91 cM, cytoband F1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3350 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136957
 protein coding gene Chr12:104729373-104831335 (-)
129S1/SvImJ ENSMUSG00200023059
 protein coding gene Chr12:96494257-96598023 (-)
A/J ENSMUSG00195018307
 protein coding gene Chr12:99057707-99159672 (-)
AKR/J ENSMUSG00220034436
 protein coding gene Chr12:96932033-97035838 (-)
BALB/cJ ENSMUSG00180033615
 protein coding gene Chr12:98241676-98343301 (-)
C3H/HeJ ENSMUSG00175028765
 protein coding gene Chr12:100869871-100971828 (-)
C57BL/6NJ ENSMUSG00215039341
 protein coding gene Chr12:97532001-97633969 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018079
 protein coding gene Chr12:99239450-99347288 (-)
CAST/EiJ ENSTCUG00005017619
 protein coding gene Chr12:96989603-97094058 (-)
CBA/J ENSMUSG00210013865
 protein coding gene Chr12:97933692-98037482 (-)
DBA/2J ENSMUSG00185045590
 protein coding gene Chr12:99699937-99803733 (-)
FVB/NJ ENSMUSG00205016434
 protein coding gene Chr12:96924129-97028756 (-)
JF1/MsJ ENSUMUG00000023402
 protein coding gene Chr12:104433643-104538656 (-)
LP/J ENSMUSG00230027233
 protein coding gene Chr12:106759606-106863368 (-)
NOD/ShiLtJ ENSMUSG00190026487
 protein coding gene Chr12:88177131-88278904 (+)
NZO/HlLtJ ENSMUSG00225036867
 protein coding gene Chr12:108496537-108598498 (-)
PWK/PhJ ENSLUMG00010011463
 protein coding gene Chr12:97874553-97979684 (-)
SPRET/EiJ ENSMSPG00010018442
 protein coding gene Chr12:100258180-100361189 (-)
WSB/EiJ ENSIUOG00005008643
 protein coding gene Chr12:96940714-97044646 (-)



Homology
more
  • Human Ortholog
    CLMN, calmin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLMN, calmin
  • Links
    NCBI Gene ID: 79789
    UniProt: Q96JQ2

  • Chr Location
    14q32.13; chr14:95181940-95319921 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    908
  • Tissues
    65
  • cDNA Data
    70
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021097 Ensembl Gene Model | MGI Sequence Detail 101960 C57BL/6J ±  kb
transcript ENSMUST00000109937 Ensembl | MGI Sequence Detail 3529 Not Applicable  
polypeptide ENSMUSP00000105563 Ensembl | MGI Sequence Detail 1052 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 70
    Primer pair 2
    Antibodies 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:2144820, MGI:2144884
References
more
  • Summaries
    All 44
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 15
  • Earliest
    J:69942 Ishisaki Z, et al., Calmin, a protein with calponin homology and transmembrane domains expressed in maturing spermatogenic cells. Genomics. 2001 Jun 1;74(2):172-9
  • Latest
    J:389864 Murata K, et al., A novel miniTurbo knock-in mouse reveals a protein interaction network of USP46 in the brain. Exp Anim. 2026 Jan 1;75(1):63-72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory