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Zc3h6 Gene Detail
Summary
  • Symbol
    Zc3h6
  • Name
    zinc finger CCCH type containing 6
  • Synonyms
    4631426G04Rik, 4833425H18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926001
    NCBI Gene: 78751
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:128809322-128860483 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 62.63 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1080 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926001
 protein coding gene Chr2:128809285-128860483 (+)
129S1/SvImJ ENSMUSG00200043699
 protein coding gene Chr2:125855318-125906490 (+)
A/J ENSMUSG00195026649
 protein coding gene Chr2:125883566-125934740 (+)
AKR/J ENSMUSG00220043622
 protein coding gene Chr2:125649207-125700386 (+)
BALB/cJ ENSMUSG00180044562
 protein coding gene Chr2:125683025-125734293 (+)
C3H/HeJ ENSMUSG00175045165
 protein coding gene Chr2:126221133-126272398 (+)
C57BL/6NJ ENSMUSG00215015853
 protein coding gene Chr2:125731786-125782958 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024278
 protein coding gene Chr2:121795579-121849907 (+)
CAST/EiJ ENSTCUG00005034858
 protein coding gene Chr2:125027204-125078514 (+)
CBA/J ENSMUSG00210030153
 protein coding gene Chr2:126078878-126130147 (+)
DBA/2J ENSMUSG00185030842
 protein coding gene Chr2:125723756-125776525 (+)
FVB/NJ ENSMUSG00205023754
 protein coding gene Chr2:124903650-124954830 (+)
JF1/MsJ ENSUMUG00000013149
 protein coding gene Chr2:125579184-125630361 (+)
LP/J ENSMUSG00230033672
 protein coding gene Chr2:127490626-127541800 (+)
NOD/ShiLtJ ENSMUSG00190014125
 protein coding gene Chr2:125840811-125891886 (+)
NZO/HlLtJ ENSMUSG00225027061
 protein coding gene Chr2:135399511-135450673 (+)
PWK/PhJ ENSLUMG00010035577
 protein coding gene Chr2:125489163-125541462 (+)
SPRET/EiJ ENSMSPG00010024183
 protein coding gene Chr2:127882057-127933703 (+)
WSB/EiJ ENSIUOG00005041640
 protein coding gene Chr2:125666643-125717790 (+)



Homology
more
  • Human Ortholog
    ZC3H6, zinc finger CCCH-type containing 6
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZC3H6, zinc finger CCCH-type containing 6
  • Synonyms
    ZC3HDC6
  • Links
    NCBI Gene ID: 376940
    UniProt: P61129

  • Chr Location
    2q14.1; chr2:112275597-112340059 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    634
  • Tissues
    37
  • cDNA Data
    14
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042851 Ensembl Gene Model | MGI Sequence Detail 51162 C57BL/6J ±  kb
transcript ENSMUST00000110320 Ensembl | MGI Sequence Detail 4916 Not Applicable  
polypeptide ENSMUSP00000105949 Ensembl | MGI Sequence Detail 1177 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1914821, MGI:2139205, MGI:2139284
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory