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5033430I15Rik Gene Detail
Summary
  • Symbol
    5033430I15Rik
  • Name
    RIKEN cDNA 5033430I15 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923250
    NCBI Gene: 76000
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:46118700-46119984 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 22.95 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923250
 lncRNA gene Chr13:46118650-46125010 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005457
 lincRNA gene Chr13:44705966-44707221 (+)
A/J MGP_AJ_G0005443
 lincRNA gene Chr13:43150985-43152240 (+)
AKR/J MGP_AKRJ_G0005422
 lincRNA gene Chr13:44339962-44341217 (+)
BALB/cJ MGP_BALBcJ_G0005424
 lincRNA gene Chr13:43357624-43358879 (+)
C3H/HeJ MGP_C3HHeJ_G0005372
 lincRNA gene Chr13:44188852-44190107 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005579
 lincRNA gene Chr13:46067923-46069178 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004956
 lincRNA gene Chr13:41207683-41208945 (+)
CAST/EiJ MGP_CASTEiJ_G0005315
 lincRNA gene Chr13:44138980-44140235 (+)
CBA/J MGP_CBAJ_G0005361
 lincRNA gene Chr13:47986745-47988000 (+)
DBA/2J MGP_DBA2J_G0005377
 lincRNA gene Chr13:42717331-42718586 (+)
FVB/NJ MGP_FVBNJ_G0005403
 lincRNA gene Chr13:42237253-42238508 (+)
LP/J MGP_LPJ_G0005460
 lincRNA gene Chr13:44929092-44930347 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005386
 lincRNA gene Chr13:47829411-47830666 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005579
 lincRNA gene Chr13:44034375-44035630 (+)
PWK/PhJ MGP_PWKPhJ_G0005264
 lincRNA gene Chr13:42837789-42839044 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005184
 lincRNA gene Chr13:42689425-42690665 (+)
WSB/EiJ MGP_WSBEiJ_G0005364
 lincRNA gene Chr13:44345818-44347073 (+)



Homology
more
  • Human Ortholog
    ATXN1-AS1, ATXN1 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATXN1-AS1, ATXN1 antisense RNA 1
  • Links
    NCBI Gene ID: 101928433

  • Chr Location
    chr6:16761138-16766883 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76000 NCBI Gene Model | MGI Sequence Detail 1285 C57BL/6J ±  kb
transcript NR_167678 RefSeq | MGI Sequence Detail 758 C57BL/6  
polypeptide Q9D3Q2 UniProt | EBI | MGI Sequence Detail 138 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 3
References
more
  • Summaries
    All 17
    Phenotypes 3
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/07/2026
MGI 6.24 		The Jackson Laboratory