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Snapc1 Gene Detail
Summary
  • Symbol
    Snapc1
  • Name
    small nuclear RNA activating complex, polypeptide 1
  • Synonyms
    2700033G17Rik, 9630050P21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922877
    NCBI Gene: 75627
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:74011255-74035740 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 32.00 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    812 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922877
 protein coding gene Chr12:74011255-74035836 (+)
129S1/SvImJ ENSMUSG00200027955
 protein coding gene Chr12:65939257-65963624 (+)
A/J ENSMUSG00195014189
 protein coding gene Chr12:68632678-68657041 (+)
AKR/J ENSMUSG00220014411
 protein coding gene Chr12:66433096-66457583 (+)
BALB/cJ ENSMUSG00180030934
 protein coding gene Chr12:67628369-67652857 (+)
C3H/HeJ ENSMUSG00175026100
 protein coding gene Chr12:70758406-70782765 (+)
C57BL/6NJ ENSMUSG00215019053
 protein coding gene Chr12:67004185-67028671 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017849
 protein coding gene Chr12:68576048-68597108 (+)
CAST/EiJ ENSTCUG00005032778
 protein coding gene Chr12:66947363-66971718 (+)
CBA/J ENSMUSG00210027387
 protein coding gene Chr12:67195444-67219811 (+)
DBA/2J ENSMUSG00185004395
 protein coding gene Chr12:69093577-69118068 (+)
FVB/NJ ENSMUSG00205018989
 protein coding gene Chr12:66814443-66838836 (+)
JF1/MsJ ENSUMUG00000008887
 protein coding gene Chr12:73065293-73090727 (+)
LP/J ENSMUSG00230019223
 protein coding gene Chr12:76057178-76081537 (+)
NOD/ShiLtJ ENSMUSG00190010974
 protein coding gene Chr12:66244800-66269174 (+)
NZO/HlLtJ ENSMUSG00225037977
 protein coding gene Chr12:78111710-78136073 (+)
PWK/PhJ ENSLUMG00010028590
 protein coding gene Chr12:67120986-67146780 (+)
SPRET/EiJ ENSMSPG00010023287
 protein coding gene Chr12:68829077-68849928 (+)
WSB/EiJ ENSIUOG00005011795
 protein coding gene Chr12:66890991-66915371 (+)



Homology
more
  • Human Ortholog
    SNAPC1, small nuclear RNA activating complex polypeptide 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNAPC1, small nuclear RNA activating complex polypeptide 1
  • Synonyms
    PTFgamma, SNAP43
  • Links
    NCBI Gene ID: 6617
    UniProt: Q16533

  • Chr Location
    14q23.2; chr14:61762325-61796443 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    665
  • Tissues
    46
  • cDNA Data
    13
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000021113 Ensembl Gene Model | MGI Sequence Detail 24486 C57BL/6J ±  kb
    transcript ENSMUST00000021532 Ensembl | MGI Sequence Detail 6275 Not Applicable  
    polypeptide ENSMUSP00000021532 Ensembl | MGI Sequence Detail 389 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2144937, MGI:2442994
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 11
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory