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Khdc4 Gene Detail
Summary
  • Symbol
    Khdc4
  • Name
    KH domain containing 4, pre-mRNA splicing factor
  • Synonyms
    2810403A07Rik, A430106P18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921450
    NCBI Gene: 74200
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:88593110-88620231 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.93 cM, cytoband F1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    620 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921450
 protein coding gene Chr3:88593087-88620240 (+)
129S1/SvImJ ENSMUSG00200036848
 protein coding gene Chr3:85448011-85475132 (+)
A/J ENSMUSG00195050548
 protein coding gene Chr3:85463216-85490230 (+)
AKR/J ENSMUSG00220048353
 protein coding gene Chr3:85417846-85444868 (+)
BALB/cJ ENSMUSG00180041076
 protein coding gene Chr3:85599508-85626656 (+)
C3H/HeJ ENSMUSG00175036594
 protein coding gene Chr3:85395966-85422984 (+)
C57BL/6NJ ENSMUSG00215048313
 protein coding gene Chr3:85835763-85862885 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025177
 protein coding gene Chr3:81465983-81493715 (+)
CAST/EiJ ENSTCUG00005047312
 protein coding gene Chr3:84913018-84940257 (+)
CBA/J ENSMUSG00210036087
 protein coding gene Chr3:85533658-85560676 (+)
DBA/2J ENSMUSG00185050081
 protein coding gene Chr3:85688054-85715201 (+)
FVB/NJ ENSMUSG00205047790
 protein coding gene Chr3:84457593-84484611 (+)
JF1/MsJ ENSUMUG00000014750
 protein coding gene Chr3:85197898-85224957 (+)
LP/J ENSMUSG00230030268
 protein coding gene Chr3:87669375-87696496 (+)
NOD/ShiLtJ ENSMUSG00190043145
 protein coding gene Chr3:85916688-85943810 (+)
NZO/HlLtJ ENSMUSG00225007382
 protein coding gene Chr3:90424940-90451958 (+)
PWK/PhJ ENSLUMG00010042327
 protein coding gene Chr3:85287280-85314302 (+)
SPRET/EiJ ENSMSPG00010047607
 protein coding gene Chr3:86139344-86163532 (+)
WSB/EiJ ENSIUOG00005046757
 protein coding gene Chr3:85945145-85972268 (+)



Homology
more
  • Human Ortholog
    KHDC4, KH domain containing 4, pre-mRNA splicing factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KHDC4, KH domain containing 4, pre-mRNA splicing factor
  • Synonyms
    BLOM7, KIAA0907, SNORA80EHG
  • Links
    NCBI Gene ID: 22889
    UniProt: Q7Z7F0

  • Chr Location
    1q22; chr1:155913043-155934413 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    27
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    12
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028060 Ensembl Gene Model | MGI Sequence Detail 27122 C57BL/6J ±  kb
transcript ENSMUST00000029696 Ensembl | MGI Sequence Detail 2981 Not Applicable  
polypeptide ENSMUSP00000029696 Ensembl | MGI Sequence Detail 612 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    Genomic 1
    cDNA 12

    Microarray probesets 4
Other
Accession IDs
less
MGI:1925180, MGI:2139651, MGI:2139724, MGI:6156097
References
more
  • Summaries
    All 41
    Diseases 1
    Gene Ontology 9
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory