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Hoxaas3 Gene Detail
Summary
  • Symbol
    Hoxaas3
  • Name
    Hoxa cluster antisense RNA 3
  • Synonyms
    2700086A05Rik
Location &
Maps
more
  • Sequence Map
    Chr6:52178104-52190577 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    176 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919878
 antisense lncRNA gene Chr6:52152197-52192056 (+)
129S1/SvImJ ENSMUSG00200005718
 lncRNA gene Chr6:49129499-49169362 (+)
A/J ENSMUSG00195006923
 lncRNA gene Chr6:48853426-48893277 (+)
AKR/J ENSMUSG00220004115
 lncRNA gene Chr6:48562491-48602372 (+)
BALB/cJ ENSMUSG00180023986
 lncRNA gene Chr6:49155143-49195009 (+)
C3H/HeJ ENSMUSG00175017678
 lncRNA gene Chr6:48921717-48961581 (+)
C57BL/6NJ ENSMUSG00215011985
 lncRNA gene Chr6:49105972-49145834 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003858
 antisense lncRNA gene Chr6:46658792-46698741 (+)
CAST/EiJ ENSTCUG00005005125
 lncRNA gene Chr6:48412059-48451995 (+)
CBA/J ENSMUSG00210018420
 lncRNA gene Chr6:48966017-49005890 (+)
DBA/2J ENSMUSG00185014929
 lncRNA gene Chr6:49548255-49588118 (+)
FVB/NJ ENSMUSG00205029837
 lncRNA gene Chr6:49206376-49246231 (+)
JF1/MsJ ENSUMUG00000016118
 lncRNA gene Chr6:48920933-48960961 (+)
LP/J ENSMUSG00230019505
 lncRNA gene Chr6:50626798-50666653 (+)
NOD/ShiLtJ ENSMUSG00190038446
 lncRNA gene Chr6:48883404-48923293 (+)
NZO/HlLtJ ENSMUSG00225013579
 lncRNA gene Chr6:52610786-52650648 (+)
PWK/PhJ ENSLUMG00010021425
 lncRNA gene Chr6:48657958-48697999 (+)
SPRET/EiJ ENSMSPG00010010371
 lncRNA gene Chr6:49241919-49281935 (+)
WSB/EiJ ENSIUOG00005028226
 lncRNA gene Chr6:49228863-49268703 (+)



Homology
more
  • Human Ortholog
    HOXA-AS3, HOXA cluster antisense RNA 3
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HOXA-AS3, HOXA cluster antisense RNA 3
  • Synonyms
    HOXA6as
  • Links
    NCBI Gene ID: 100133311

  • Chr Location
    7p15.2; chr7:27129977-27155928 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 72628 NCBI Gene Model | MGI Sequence Detail 12474 C57BL/6J ±  kb
transcript NR_015611 RefSeq | MGI Sequence Detail 835 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5
References
more
  • Summaries
    All 18
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory