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Gtf2a1l Gene Detail
Summary
  • Symbol
    Gtf2a1l
  • Name
    general transcription factor IIA, 1-like
  • Synonyms
    1700011N16Rik, Alf, Gtf2a1lf
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919078
    NCBI Gene: 71828
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:88976088-89022580 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 58.22 cM, cytoband E5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1518 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919078
 protein coding gene Chr17:88972921-89022585 (+)
129S1/SvImJ ENSMUSG00200022117
 protein coding gene Chr17:84383824-84429871 (+)
A/J ENSMUSG00195028869
 protein coding gene Chr17:85783871-85829926 (+)
AKR/J ENSMUSG00220016090
 protein coding gene Chr17:84723337-84769099 (+)
BALB/cJ ENSMUSG00180025787
 protein coding gene Chr17:85455942-85501994 (+)
C3H/HeJ ENSMUSG00175006765
 protein coding gene Chr17:84727074-84773133 (+)
C57BL/6NJ ENSMUSG00215015636
 protein coding gene Chr17:84426023-84472525 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021956
 protein coding gene Chr17:84252065-84297640 (+)
CAST/EiJ ENSTCUG00005011739
 protein coding gene Chr17:85300292-85350085 (+)
CBA/J ENSMUSG00210022168
 protein coding gene Chr17:84580371-84626404 (+)
DBA/2J ENSMUSG00185020338
 protein coding gene Chr17:87385473-87431969 (+)
FVB/NJ ENSMUSG00205005992
 protein coding gene Chr17:85203272-85249771 (+)
JF1/MsJ ENSUMUG00000015192
 protein coding gene Chr17:87134203-87189459 (+)
LP/J ENSMUSG00230009185
 protein coding gene Chr17:88427872-88474370 (+)
NOD/ShiLtJ ENSMUSG00190009213
 protein coding gene Chr17:84457397-84512650 (+)
NZO/HlLtJ ENSMUSG00225030857
 protein coding gene Chr17:90673217-90719121 (+)
PWK/PhJ ENSLUMG00010031576
 protein coding gene Chr17:84358186-84404108 (+)
SPRET/EiJ ENSMSPG00010019801
 protein coding gene Chr17:84937095-84981296 (+)
WSB/EiJ ENSIUOG00005020299
 protein coding gene Chr17:85395151-85441670 (+)



Homology
more
  • Human Ortholog
    GTF2A1L, general transcription factor IIA subunit 1 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GTF2A1L, general transcription factor IIA subunit 1 like
  • Synonyms
    ALF
  • Links
    NCBI Gene ID: 11036
    UniProt: Q9UNN4

  • Chr Location
    2p16.3; chr2:48617798-48733148 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    791
  • Tissues
    164
  • cDNA Data
    9
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000024154 Ensembl Gene Model | MGI Sequence Detail 46493 C57BL/6J ±  kb
    transcript ENSMUST00000024970 Ensembl | MGI Sequence Detail 1621 Not Applicable  
    polypeptide ENSMUSP00000024970 Ensembl | MGI Sequence Detail 468 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 10
      Primer pair 3

      Microarray probesets 3
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 5
      Gene Ontology 7
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory