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5430416N02Rik Gene Detail
Summary
  • Symbol
    5430416N02Rik
  • Name
    RIKEN cDNA 5430416N02 gene
  • Synonyms
    Gm3514
Location &
Maps
more
  • Sequence Map
    Chr5:100568701-100577394 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 48.48 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    333 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918676
 lncRNA gene Chr5:100568367-100578234 (-)
129S1/SvImJ ENSMUSG00200007006
 lncRNA gene Chr5:94310267-94319340 (-)
A/J ENSMUSG00195034835
 lncRNA gene Chr5:93876184-93885254 (-)
AKR/J ENSMUSG00220037882
 lncRNA gene Chr5:93345683-93354750 (-)
BALB/cJ ENSMUSG00180036692
 lncRNA gene Chr5:94032339-94041407 (-)
C3H/HeJ ENSMUSG00175033301
 lncRNA gene Chr5:96136952-96146020 (-)
C57BL/6NJ ENSMUSG00215020511
 lncRNA gene Chr5:93953923-93962993 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006109
 lincRNA gene Chr5:93347534-93355371 (-)
CAST/EiJ ENSTCUG00005025262
 lncRNA gene Chr5:93346128-93355154 (-)
CBA/J ENSMUSG00210034519
 lncRNA gene Chr5:94887272-94896341 (-)
DBA/2J ENSMUSG00185038938
 lncRNA gene Chr5:97805621-97814689 (-)
FVB/NJ ENSMUSG00205044566
 lncRNA gene Chr5:93782439-93791507 (-)
JF1/MsJ ENSUMUG00000046829
 lncRNA gene Chr5:100769838-100778889 (-)
LP/J ENSMUSG00230032856
 lncRNA gene Chr5:101851939-101861012 (-)
NOD/ShiLtJ ENSMUSG00190027231
 lncRNA gene Chr5:93784446-93793520 (-)
NZO/HlLtJ ENSMUSG00225012982
 lncRNA gene Chr5:109621451-109630519 (-)
PWK/PhJ ENSLUMG00010016456
 lncRNA gene Chr5:92893789-92902843 (-)
SPRET/EiJ ENSMSPG00010025269
 lncRNA gene Chr5:95777474-95787239 (-)
WSB/EiJ ENSIUOG00005031304
 lncRNA gene Chr5:96520531-96529557 (-)



Homology
more
  • Human Ortholog
    THAP9-AS1, THAP9 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THAP9-AS1, THAP9 antisense RNA 1
  • Links
    NCBI Gene ID: 100499177

  • Chr Location
    chr4:82893009-82900960 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving 5430416N02Rik
  • Find Mice (IMSR)
    1 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    23
Sequences &
Gene Models
less
  • All Sequences
    59
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100503199 NCBI Gene Model | MGI Sequence Detail 8694 C57BL/6J ±  kb
transcript NR_034038 RefSeq | MGI Sequence Detail 626 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 1
Other
Accession IDs
less
MGI:3781691
References
more
  • Summaries
    All 20
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory