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Chpf2 Gene Detail
Summary
  • Symbol
    Chpf2
  • Name
    chondroitin polymerizing factor 2
  • Synonyms
    2010209O12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917522
    NCBI Gene: 100910
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:24791739-24799554 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 11.93 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    163 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917522
 protein coding gene Chr5:24788950-24799554 (+)
129S1/SvImJ ENSMUSG00200011368
 protein coding gene Chr5:20398980-20406639 (+)
A/J ENSMUSG00195037137
 protein coding gene Chr5:19869230-19876921 (+)
AKR/J ENSMUSG00220034954
 protein coding gene Chr5:19951870-19959561 (+)
BALB/cJ ENSMUSG00180023826
 protein coding gene Chr5:19736709-19744363 (+)
C3H/HeJ ENSMUSG00175041429
 protein coding gene Chr5:21667446-21675137 (+)
C57BL/6NJ ENSMUSG00215040206
 protein coding gene Chr5:20303650-20311304 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027019
 protein coding gene Chr5:19502803-19510935 (+)
CAST/EiJ ENSTCUG00005003077
 protein coding gene Chr5:19879094-19886547 (+)
CBA/J ENSMUSG00210039023
 protein coding gene Chr5:20706727-20714418 (+)
DBA/2J ENSMUSG00185035693
 protein coding gene Chr5:22239222-22246914 (+)
FVB/NJ ENSMUSG00205029489
 protein coding gene Chr5:19459749-19467403 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230023166
 protein coding gene Chr5:26680974-26688633 (+)
NOD/ShiLtJ ENSMUSG00190004756
 protein coding gene Chr5:19773829-19781487 (+)
NZO/HlLtJ ENSMUSG00225016739
 protein coding gene Chr5:32089999-32097656 (+)
PWK/PhJ ENSLUMG00010031709
 protein coding gene Chr5:19847199-19854652 (+)
SPRET/EiJ ENSMSPG00010032021
 protein coding gene Chr5:20706198-20712900 (+)
WSB/EiJ ENSIUOG00005040757
 protein coding gene Chr5:22596339-22603996 (+)



Homology
more
  • Human Ortholog
    CHPF2, chondroitin polymerizing factor 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHPF2, chondroitin polymerizing factor 2
  • Synonyms
    chPF-2, ChSy-3, CSGlcAT, CSGLCA-T
  • Links
    NCBI Gene ID: 54480
    UniProt: Q9P2E5

  • Chr Location
    7q36.1; chr7:151232483-151240979 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    609
  • Tissues
    4
  • cDNA Data
    11
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038181 Ensembl Gene Model | MGI Sequence Detail 7816 C57BL/6J ±  kb
transcript ENSMUST00000088295 Ensembl | MGI Sequence Detail 5371 Not Applicable  
polypeptide ENSMUSP00000085633 Ensembl | MGI Sequence Detail 768 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000005935 chondroitin sulfate glucuronyltransferase
    (term hierarchy)
  • EC
    2.4.1.-
  • InterPro Domains
    IPR008428 Chondroitin N-acetylgalactosaminyltransferase
    IPR051227 Chondroitin sulfate glycosyltransferase
  • GlyGen
    Q3UU43 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 15
    cDNA 11
    Primer pair 3
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141145
References
more
  • Summaries
    All 45
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 9
    Phenotypes 14
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:265657 Kleaveland B, et al., A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain. Cell. 2018 Jul 12;174(2):350-362.e17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory