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Ccdc54 Gene Detail
Summary
  • Symbol
    Ccdc54
  • Name
    coiled-coil domain containing 54
  • Synonyms
    1700007N18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916589
    NCBI Gene: 69339
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:50410222-50411517 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 31.50 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    126 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916589
 protein coding gene Chr16:50410220-50411517 (-)
129S1/SvImJ ENSMUSG00200021139
 protein coding gene Chr16:47295766-47297063 (-)
A/J ENSMUSG00195003380
 protein coding gene Chr16:46899675-46900972 (-)
AKR/J ENSMUSG00220022283
 protein coding gene Chr16:47252984-47254281 (-)
BALB/cJ ENSMUSG00180028155
 protein coding gene Chr16:47104315-47105612 (-)
C3H/HeJ ENSMUSG00175025470
 protein coding gene Chr16:47375838-47377135 (-)
C57BL/6NJ ENSMUSG00215005571
 protein coding gene Chr16:47213835-47215132 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020803
 protein coding gene Chr16:47398836-47400131 (-)
CAST/EiJ ENSTCUG00005012779
 protein coding gene Chr16:47505649-47506946 (-)
CBA/J ENSMUSG00210016444
 protein coding gene Chr16:47413133-47414430 (-)
DBA/2J ENSMUSG00185010146
 protein coding gene Chr16:47284490-47285787 (-)
FVB/NJ ENSMUSG00205010670
 protein coding gene Chr16:47190831-47192128 (-)
JF1/MsJ ENSUMUG00000029175
 protein coding gene Chr16:47505828-47507125 (-)
LP/J ENSMUSG00230028564
 protein coding gene Chr16:49846547-49847844 (-)
NOD/ShiLtJ ENSMUSG00190017469
 protein coding gene Chr16:47319649-47320946 (-)
NZO/HlLtJ ENSMUSG00225025457
 protein coding gene Chr16:52941836-52943133 (-)
PWK/PhJ ENSLUMG00010027096
 protein coding gene Chr16:47334989-47336286 (-)
SPRET/EiJ ENSMSPG00010007303
 protein coding gene Chr16:47604568-47605864 (-)
WSB/EiJ ENSIUOG00005012787
 protein coding gene Chr16:47492348-47493645 (-)



Homology
more
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
  • Synonyms
    NYD-SP17, SP17
  • Links
    NCBI Gene ID: 84692
    UniProt: Q8NEL0

  • Chr Location
    3q13.12; chr3:107377439-107378635 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    16
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69339 NCBI Gene Model | MGI Sequence Detail 1296 C57BL/6J ±  kb
transcript NM_027046 RefSeq | MGI Sequence Detail 1296 C57BL/6  
polypeptide Q9DAL3 UniProt | EBI | MGI Sequence Detail 329 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146467, MGI:2146678
References
more
  • Summaries
    All 20
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory