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Btf3l4 Gene Detail
Summary
  • Symbol
    Btf3l4
  • Name
    basic transcription factor 3-like 4
  • Synonyms
    4632412E09Rik, 5730434I03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915312
    NCBI Gene: 70533
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:108671492-108690811 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.64 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    469 from dbSNP Build 142
  • Strain Annotations
    22
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915312
 protein coding gene Chr4:108671489-108691445 (-)
129S1/SvImJ ENSMUSG00200047801
 protein coding gene Chr4:103715815-103737255 (-)
A/J ENSMUSG00195044104
 protein coding gene Chr4:104258849-104280291 (-)
AKR/J ENSMUSG00220011889
 protein coding gene Chr4:103644561-103666037 (-)
AKR/J ENSMUSG00220013100
 protein coding gene Chr13:89686881-89689041 (-)
BALB/cJ ENSMUSG00180033177
 protein coding gene Chr13:91766109-91768269 (-)
BALB/cJ ENSMUSG00180044157
 protein coding gene Chr4:103087517-103108968 (-)
C3H/HeJ ENSMUSG00175015580
 protein coding gene Chr13:91929532-91931692 (-)
C3H/HeJ ENSMUSG00175036077
 protein coding gene Chr4:104091893-104113341 (-)
C57BL/6NJ ENSMUSG00215015647
 protein coding gene Chr4:104004708-104025741 (-)
C57BL/6NJ ENSMUSG00215024830
 protein coding gene Chr13:91818110-91820270 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026274
 protein coding gene Chr4:100912493-100931591 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210052419
 protein coding gene Chr4:103724908-103746355 (-)
DBA/2J ENSMUSG00185045235
 protein coding gene Chr4:104436100-104458485 (-)
FVB/NJ ENSMUSG00205029136
 protein coding gene Chr13:90713362-90715522 (-)
FVB/NJ ENSMUSG00205020648
 protein coding gene Chr4:102669187-102690629 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230036328
 protein coding gene Chr13:104917784-104919944 (-)
LP/J ENSMUSG00230006415
 protein coding gene Chr4:107752161-107773601 (-)
NOD/ShiLtJ ENSMUSG00190039478
 protein coding gene Chr4:103094676-103116124 (-)
NOD/ShiLtJ ENSMUSG00190029954
 protein coding gene Chr13:91598898-91601058 (-)
NZO/HlLtJ ENSMUSG00225032123
 protein coding gene Chr4:112854601-112876986 (-)
NZO/HlLtJ ENSMUSG00225032786
 protein coding gene Chr13:97443459-97445619 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    BTF3L4, basic transcription factor 3 like 4
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BTF3L4, basic transcription factor 3 like 4
  • Links
    NCBI Gene ID: 91408
    UniProt: Q96K17

  • Chr Location
    1p32.3; chr1:52056199-52090716 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
  • All Mutations and Alleles
    67
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    2
  • Gene trapped
    59
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Btf3l4
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    36 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    712
  • Tissues
    106
  • cDNA Data
    23
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028568 Ensembl Gene Model | MGI Sequence Detail 19320 C57BL/6J ±  kb
transcript ENSMUST00000102742 Ensembl | MGI Sequence Detail 3141 Not Applicable  
polypeptide ENSMUSP00000099803 Ensembl | MGI Sequence Detail 158 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 7
Other
Accession IDs
less
MGI:1917783, MGI:2140228, MGI:2140465, MGI:2140597
References
more
  • Summaries
    All 41
    Developmental Gene Expression 3
    Phenotypes 15
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory