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Ttc39d Gene Detail
Summary
  • Symbol
    Ttc39d
  • Name
    tetratricopeptide repeat domain 39D
  • Synonyms
    4930560E09Rik
Location &
Maps
more
  • Sequence Map
    Chr17:80523343-80525365 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 50.63 cM, cytoband E3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914987
 protein coding gene Chr17:80514889-80525365 (+)
129S1/SvImJ ENSMUSG00200023014
 protein coding gene Chr17:75882780-75893256 (+)
A/J ENSMUSG00195027025
 protein coding gene Chr17:77253943-77264588 (+)
AKR/J ENSMUSG00220013438
 protein coding gene Chr17:76169493-76179916 (+)
BALB/cJ ENSMUSG00180004571
 protein coding gene Chr17:76956065-76966542 (+)
C3H/HeJ ENSMUSG00175014526
 protein coding gene Chr17:76227081-76237559 (+)
C57BL/6NJ ENSMUSG00215011778
 protein coding gene Chr17:75942739-75953222 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021903
 protein coding gene Chr17:75936444-75945060 (+)
CAST/EiJ ENSTCUG00005015129
 protein coding gene Chr17:76819016-76829487 (+)
CBA/J ENSMUSG00210019883
 protein coding gene Chr17:76088497-76098973 (+)
DBA/2J ENSMUSG00185012626
 protein coding gene Chr17:78922033-78932510 (+)
FVB/NJ ENSMUSG00205022147
 protein coding gene Chr17:76704163-76714640 (+)
JF1/MsJ ENSUMUG00000009471
 protein coding gene Chr17:78648818-78659194 (+)
LP/J ENSMUSG00230021292
 protein coding gene Chr17:79923511-79933988 (+)
NOD/ShiLtJ ENSMUSG00190009277
 protein coding gene Chr17:75988858-75999335 (+)
NZO/HlLtJ ENSMUSG00225030395
 protein coding gene Chr17:82198251-82211314 (+)
PWK/PhJ ENSLUMG00010005129
 protein coding gene Chr17:75869102-75879508 (+)
SPRET/EiJ ENSMSPG00010007971
 protein coding gene Chr17:76367282-76377526 (+)
WSB/EiJ ENSIUOG00005009945
 protein coding gene Chr17:76913179-76923652 (+)



Homology
more
  • Human Ortholog
    TTC39DP, tetratricopeptide repeat domain 39D, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC39DP, tetratricopeptide repeat domain 39D, pseudogene
  • Links
    NCBI Gene ID: 646640

  • Chr Location
    2p22.1; chr2:38763496-38765221 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67737 NCBI Gene Model | MGI Sequence Detail 2023 C57BL/6J ±  kb
transcript NM_026351 RefSeq | MGI Sequence Detail 2027 Not Specified  
polypeptide NP_080627 RefSeq | MGI Sequence Detail 604 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR019412 IML2-like/Tetratricopeptide repeat protein 39-like
    IPR011990 Tetratricopeptide-like helical domain superfamily
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory