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Ctxnd2 Gene Detail
Summary
  • Symbol
    Ctxnd2
  • Name
    cortexin domain containing 2
  • Synonyms
    4930558C23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914904
    NCBI Gene: 67654
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95293769-95310143 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    400 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914904
 protein coding gene Chr3:95293769-95310152 (-)
129S1/SvImJ ENSMUSG00200040235
 protein coding gene Chr3:91958869-91967294 (-)
A/J ENSMUSG00195041773
 protein coding gene Chr3:92275790-92292217 (-)
AKR/J ENSMUSG00220049954
 protein coding gene Chr3:90662846-90679226 (-)
BALB/cJ ENSMUSG00180039051
 protein coding gene Chr3:92275598-92292027 (-)
C3H/HeJ ENSMUSG00175025158
 protein coding gene Chr3:91919466-91935894 (-)
C57BL/6NJ ENSMUSG00215030873
 protein coding gene Chr3:92638303-92654681 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005678
 lincRNA gene Chr3:89489901-89501018 (-)
CAST/EiJ ENSTCUG00005044940
 protein coding gene Chr3:92478251-92487887 (-)
CBA/J ENSMUSG00210050931
 protein coding gene Chr3:92456924-92473351 (-)
DBA/2J ENSMUSG00185041279
 protein coding gene Chr3:92873593-92889967 (-)
FVB/NJ ENSMUSG00205031436
 protein coding gene Chr3:91570216-91586595 (-)
JF1/MsJ ENSUMUG00000043817
 protein coding gene Chr3:91769870-91780605 (-)
LP/J ENSMUSG00230044878
 protein coding gene Chr3:94822310-94830734 (-)
NOD/ShiLtJ ENSMUSG00190042086
 protein coding gene Chr3:92968174-92979107 (-)
NZO/HlLtJ ENSMUSG00225012251
 protein coding gene Chr3:97237036-97253415 (-)
PWK/PhJ ENSLUMG00010049702
 protein coding gene Chr3:91750703-91761447 (-)
SPRET/EiJ ENSMSPG00010043367
 protein coding gene Chr3:92053387-92064305 (-)
WSB/EiJ ENSIUOG00005026100
 protein coding gene Chr3:92396147-92407030 (-)



Homology
more
  • Human Ortholog
    CTXND2, cortexin domain containing 2
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTXND2, cortexin domain containing 2
  • Links
    NCBI Gene ID: 100996521
    UniProt: A0A1B0GV90

  • Chr Location
    chr1:150887136-150913292 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Ctxnd2
  • Find Mice (IMSR)
    17 strains or lines available
Males homozygous for a null allele show normal male fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 67654 NCBI Gene Model | MGI Sequence Detail 16375 C57BL/6J ±  kb
transcript NM_001384190 RefSeq | MGI Sequence Detail 725 C57BL/6  
polypeptide A0A1B0GQX3 UniProt | EBI | MGI Sequence Detail 59 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9
Other
Accession IDs
less
MGI:7284179
References
more
  • Summaries
    All 19
    Diseases 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:315008 Oyama Y, et al., CRISPR/Cas9-mediated genome editing reveals 12 testis-enriched genes dispensable for male fertility in mice. Asian J Androl. 2021 Jul 16;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory