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Neat1 Gene Detail
Summary
  • Symbol
    Neat1
  • Name
    nuclear paraspeckle assembly transcript 1 (non-protein coding)
  • Synonyms
    2310043N10Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914211
    NCBI Gene: 66961
  • Alliance
    genome feature page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:5874736-5895508 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 4.34 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    632 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914211
 lncRNA gene Chr19:5874736-5897132 (-)
129S1/SvImJ ENSMUSG00200053291
 lncRNA gene Chr19:2637153-2658312 (-)
A/J ENSMUSG00195053974
 lncRNA gene Chr19:3032455-3053615 (-)
AKR/J ENSMUSG00220050343
 lncRNA gene Chr19:2805580-2826747 (-)
BALB/cJ ENSMUSG00180051298
 lncRNA gene Chr19:3407165-3428330 (-)
C3H/HeJ ENSMUSG00175015056
 lncRNA gene Chr19:2657357-2678522 (-)
C57BL/6NJ ENSMUSG00215048505
 lncRNA gene Chr19:2875450-2896615 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005281
 lincRNA gene Chr19:2575324-2596913 (-)
CAST/EiJ ENSTCUG00005043145
 lncRNA gene Chr19:2794391-2815500 (-)
CBA/J ENSMUSG00210050846
 lncRNA gene Chr19:2660137-2681292 (-)
DBA/2J ENSMUSG00185053355
 lncRNA gene Chr19:3036626-3057781 (-)
FVB/NJ ENSMUSG00205052747
 lncRNA gene Chr19:3042745-3063922 (-)
JF1/MsJ ENSUMUG00000056934
 lncRNA gene Chr19:3012815-3033961 (-)
LP/J ENSMUSG00230054310
 lncRNA gene Chr19:3944042-3965204 (-)
NOD/ShiLtJ ENSMUSG00190052354
 lncRNA gene Chr19:2566959-2588124 (-)
NZO/HlLtJ ENSMUSG00225026870
 lncRNA gene Chr19:7652854-7674016 (-)
PWK/PhJ ENSLUMG00010008332
 lncRNA gene Chr19:2778414-2799261 (-)
SPRET/EiJ ENSMSPG00010050504
 lncRNA gene Chr19:2766293-2787345 (-)
WSB/EiJ ENSIUOG00005051889
 lncRNA gene Chr19:2674944-2701481 (-)



Homology
more
  • Human Ortholog
    NEAT1, nuclear paraspeckle assembly transcript 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NEAT1, nuclear paraspeckle assembly transcript 1
  • Synonyms
    LINC00084, NCRNA00084, TncRNA, TP53LC15, VINC
  • Links
    NCBI Gene ID: 283131

  • Chr Location
    11q13.1; chr11:65422774-65445540 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human NEAT1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 1 allele in 2 genetic backgrounds
    25 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation lack paraspeckles in the nucleus and exhibit reduced pup survival associated with impaired mammary gland development.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    818
  • Tissues
    47
  • cDNA Data
    13
  • Literature Summary
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      76
    • RefSeq
      2
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66961 NCBI Gene Model | MGI Sequence Detail 20773 C57BL/6J ±  kb
    transcript NR_131212 RefSeq | MGI Sequence Detail 20771 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 29
      cDNA 13
      Primer pair 11
      Other 5

      Microarray probesets 1
    References
    more
    • Summaries
      All 74
      Developmental Gene Expression 10
      Phenotypes 25
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:379647 Ou F, et al., Complete stranded RNA profiling during early mouse gonad development. NAR Mol Med. 2025 Apr;2(2):ugaf014
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory