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Ly6i Gene Detail
Summary
  • Symbol
    Ly6i
  • Name
    lymphocyte antigen 6 family member I
  • Synonyms
    Ly-6I, Ly-6M
  • Feature Type
    protein coding gene
  • IDs
    MGI:1888480
    NCBI Gene: 57248
  • Member of
    Ly6 cluster
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74851383-74855279 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    323 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1888480
 protein coding gene Chr15:74851383-74855279 (-)
129S1/SvImJ ENSMUSG00200048816
 protein coding gene Chr15:71957326-71961222 (-)
A/J ENSMUSG00195045791
 protein coding gene Chr15:72017896-72021519 (-)
AKR/J ENSMUSG00220045558
 protein coding gene Chr15:71945760-71949658 (-)
BALB/cJ ENSMUSG00180046589
 protein coding gene Chr15:71790352-71793976 (-)
C3H/HeJ ENSMUSG00175049353
 protein coding gene Chr15:72152272-72155893 (-)
C57BL/6NJ ENSMUSG00215050440
 protein coding gene Chr15:71854835-71858731 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005046582
 protein coding gene Chr15:71448934-71452821 (-)
CBA/J ENSMUSG00210042482
 protein coding gene Chr15:71927326-71931225 (-)
DBA/2J ENSMUSG00185050559
 protein coding gene Chr15:71880340-71884236 (-)
FVB/NJ ENSMUSG00205039766
 protein coding gene Chr15:71626199-71630095 (-)
JF1/MsJ ENSUMUG00000043826
 protein coding gene Chr15:71512547-71516437 (-)
LP/J ENSMUSG00230052005
 protein coding gene Chr15:75244392-75248288 (-)
NOD/ShiLtJ ENSMUSG00190050394
 protein coding gene Chr15:71984141-71987770 (-)
NZO/HlLtJ ENSMUSG00225050185
 protein coding gene Chr15:75510609-75514518 (-)
PWK/PhJ ENSLUMG00010050723
 protein coding gene Chr15:71797339-71801228 (-)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005049458
 protein coding gene Chr15:71977010-71980609 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 57248 NCBI Gene Model | MGI Sequence Detail 3897 C57BL/6J ±  kb
transcript NM_020498 RefSeq | MGI Sequence Detail 1156 ZRU/MplStud  
polypeptide Q9WU67 UniProt | EBI | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2146060
References
more
  • Summaries
    All 43
    Diseases 1
    Gene Ontology 4
    Phenotypes 24
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory