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Pcnx3 Gene Detail
Summary
  • Symbol
    Pcnx3
  • Name
    pecanex homolog 3
  • Synonyms
    Pcnxl3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861733
    NCBI Gene: 104401
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
  • Candidate for QTL
    1 QTL
Location &
Maps
more
  • Sequence Map
    Chr19:5714663-5738936 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 4.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    338 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861733
 protein coding gene Chr19:5714663-5739036 (-)
129S1/SvImJ ENSMUSG00200043754
 protein coding gene Chr19:2476987-2501262 (-)
A/J ENSMUSG00195045590
 protein coding gene Chr19:2871459-2896684 (-)
AKR/J ENSMUSG00220042283
 protein coding gene Chr19:2644592-2669815 (-)
BALB/cJ ENSMUSG00180035288
 protein coding gene Chr19:3246170-3271395 (-)
C3H/HeJ ENSMUSG00175010862
 protein coding gene Chr19:2496382-2521603 (-)
C57BL/6NJ ENSMUSG00215042858
 protein coding gene Chr19:2715202-2739475 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022564
 protein coding gene Chr19:2413153-2436769 (-)
CAST/EiJ ENSTCUG00005037122
 protein coding gene Chr19:2634126-2659237 (-)
CBA/J ENSMUSG00210049173
 protein coding gene Chr19:2499819-2524543 (-)
DBA/2J ENSMUSG00185039337
 protein coding gene Chr19:2876302-2901028 (-)
FVB/NJ ENSMUSG00205050103
 protein coding gene Chr19:2882574-2907104 (-)
JF1/MsJ ENSUMUG00000027516
 protein coding gene Chr19:2852557-2876529 (-)
LP/J ENSMUSG00230052684
 protein coding gene Chr19:3783902-3808175 (-)
NOD/ShiLtJ ENSMUSG00190022180
 protein coding gene Chr19:2405979-2431204 (-)
NZO/HlLtJ ENSMUSG00225026684
 protein coding gene Chr19:7492665-7516938 (-)
PWK/PhJ ENSLUMG00010003833
 protein coding gene Chr19:2620726-2644335 (-)
SPRET/EiJ ENSMSPG00010048080
 protein coding gene Chr19:2609821-2634302 (-)
WSB/EiJ ENSIUOG00005050381
 protein coding gene Chr19:2514442-2539150 (-)



Homology
more
  • Human Ortholog
    PCNX3, pecanex 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCNX3, pecanex 3
  • Synonyms
    PCNXL3
  • Links
    NCBI Gene ID: 399909
    UniProt: Q9H6A9

  • Chr Location
    11q13.1; chr11:65615754-65637441 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    667
  • Tissues
    53
  • cDNA Data
    112
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054874 Ensembl Gene Model | MGI Sequence Detail 24274 C57BL/6J ±  kb
transcript ENSMUST00000113615 Ensembl | MGI Sequence Detail 7264 Not Applicable  
polypeptide ENSMUSP00000109245 Ensembl | MGI Sequence Detail 2028 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 117
    Genomic 4
    cDNA 113

    Microarray probesets 3
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:63233 Saridaki A, et al., Genomic sequencing reveals the structure of the Kcnk6 and map3k11 genes and their close vicinity to the sipa1 gene on mouse chromosome 19. Cytogenet Cell Genet. 2000;89(1-2):85-8
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory