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Praf2 Gene Detail
Summary
  • Symbol
    Praf2
  • Name
    PRA1 domain family 2
  • Synonyms
    DXImx39e, JM4, Sfc20
  • Feature Type
    protein coding gene
  • IDs
    MGI:1859607
    NCBI Gene: 54637
  • Alliance
    genome feature page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:7594810-7597302 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 3.48 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1859607
 protein coding gene ChrX:7594678-7597303 (+)
129S1/SvImJ ENSMUSG00200032196
 protein coding gene ChrX:2295301-2297926 (+)
A/J ENSMUSG00195038211
 protein coding gene ChrX:2318266-2320891 (+)
AKR/J ENSMUSG00220028199
 protein coding gene ChrX:2306298-2308923 (+)
BALB/cJ ENSMUSG00180026977
 protein coding gene ChrX:2294882-2297507 (+)
C3H/HeJ ENSMUSG00175032488
 protein coding gene ChrX:2329951-2332576 (+)
C57BL/6NJ ENSMUSG00215038221
 protein coding gene ChrX:2993788-2996413 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032895
 protein coding gene ChrX:1872047-1874665 (+)
CAST/EiJ ENSTCUG00005028674
 protein coding gene ChrX:2265766-2268396 (+)
CBA/J ENSMUSG00210032081
 protein coding gene ChrX:2346824-2349449 (+)
DBA/2J ENSMUSG00185027754
 protein coding gene ChrX:8963957-8966582 (+)
FVB/NJ ENSMUSG00205021497
 protein coding gene ChrX:2340580-2343205 (+)
JF1/MsJ ENSUMUG00000030609
 protein coding gene ChrX:22850397-22853021 (+)
LP/J ENSMUSG00230027644
 protein coding gene ChrX:13484182-13486807 (+)
NOD/ShiLtJ ENSMUSG00190036861
 protein coding gene ChrX:2321167-2323792 (+)
NZO/HlLtJ ENSMUSG00225044423
 protein coding gene ChrX:18749688-18752313 (+)
PWK/PhJ ENSLUMG00010029391
 protein coding gene ChrX:2310796-2313420 (+)
SPRET/EiJ ENSMSPG00010024256
 protein coding gene ChrX:2347964-2350594 (+)
WSB/EiJ ENSIUOG00005029457
 protein coding gene ChrX:16204017-16206641 (-)



Homology
more
  • Human Ortholog
    PRAF2, PRA1 domain family member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRAF2, PRA1 domain family member 2
  • Synonyms
    JM4, Yip6a
  • Links
    NCBI Gene ID: 11230
    UniProt: O60831

  • Chr Location
    Xp11.23; chrX:49071161-49074017 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    616
  • Tissues
    3
  • cDNA Data
    45
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 54637 NCBI Gene Model | MGI Sequence Detail 2493 C57BL/6J ±  kb
transcript NM_138602 RefSeq | MGI Sequence Detail 1206 ZRU/MplStud  
polypeptide Q9JIG8 UniProt | EBI | MGI Sequence Detail 178 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 50
    Genomic 5
    cDNA 45

    Microarray probesets 4
Other
Accession IDs
less
MGI:2140183, MGI:2148054
References
more
  • Summaries
    All 38
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory