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Gypc Gene Detail
Summary
  • Symbol
    Gypc
  • Name
    glycophorin C
  • Synonyms
    0610037F22Rik, Cd236r, Gerbich antigen
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098566
    NCBI Gene: 71683
  • Alliance
    genome feature page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:32661375-32693087 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 18.05 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1162 from dbSNP Build 142
  • Strain Annotations
    26
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098566
 protein coding gene Chr18:32661373-32693087 (-)
129S1/SvImJ ENSMUSG00200015532
 protein coding gene Chr18:29661632-29667198 (-)
129S1/SvImJ ENSMUSG00200015516
 protein coding gene Chr18:29659874-29661797 (-)
A/J ENSMUSG00195002310
 protein coding gene Chr18:29848493-29854044 (-)
A/J ENSMUSG00195002304
 protein coding gene Chr18:29846735-29848658 (-)
AKR/J ENSMUSG00220011308
 protein coding gene Chr18:29809040-29810963 (-)
AKR/J ENSMUSG00220011322
 protein coding gene Chr18:29810798-29816370 (-)
BALB/cJ ENSMUSG00180003176
 protein coding gene Chr18:30315608-30321149 (-)
BALB/cJ ENSMUSG00180003170
 protein coding gene Chr18:30313850-30315773 (-)
C3H/HeJ ENSMUSG00175022510
 protein coding gene Chr18:29830848-29836388 (-)
C3H/HeJ ENSMUSG00175022498
 protein coding gene Chr18:29829090-29831013 (-)
C57BL/6NJ ENSMUSG00215020722
 protein coding gene Chr18:29532027-29533842 (-)
C57BL/6NJ ENSMUSG00215020776
 protein coding gene Chr18:29533677-29539215 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022077
 protein coding gene Chr18:29889056-29921296 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210015931
 protein coding gene Chr18:29847376-29852918 (-)
CBA/J ENSMUSG00210015925
 protein coding gene Chr18:29845618-29847541 (-)
DBA/2J ENSMUSG00185022524
 protein coding gene Chr18:29780207-29782130 (-)
DBA/2J ENSMUSG00185022535
 protein coding gene Chr18:29781965-29787519 (-)
FVB/NJ ENSMUSG00205022314
 protein coding gene Chr18:29518448-29520371 (-)
FVB/NJ ENSMUSG00205022387
 protein coding gene Chr18:29520206-29527207 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230042723
 protein coding gene Chr18:31857409-31859332 (-)
LP/J ENSMUSG00230042781
 protein coding gene Chr18:31859167-31864736 (-)
NOD/ShiLtJ ENSMUSG00190006536
 protein coding gene Chr18:29569870-29575416 (-)
NOD/ShiLtJ ENSMUSG00190006527
 protein coding gene Chr18:29568112-29570035 (-)
NZO/HlLtJ ENSMUSG00225045746
 protein coding gene Chr18:31773396-31778938 (-)
NZO/HlLtJ ENSMUSG00225045734
 protein coding gene Chr18:31771638-31773561 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GYPC, glycophorin C (Gerbich blood group)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GYPC, glycophorin C (Gerbich blood group)
  • Synonyms
    CD236, CD236R, GE, GPC, GPD, GYPD, PAS-2, PAS-2'
  • Links
    NCBI Gene ID: 2995
    UniProt: P04921

  • Chr Location
    2q14.3; chr2:126655938-126696667 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human GYPC associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    651
  • Tissues
    6
  • cDNA Data
    42
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090523 Ensembl Gene Model | MGI Sequence Detail 31713 C57BL/6J ±  kb
transcript ENSMUST00000174459 Ensembl | MGI Sequence Detail 2180 Not Applicable  
polypeptide ENSMUSP00000134317 Ensembl | MGI Sequence Detail 95 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918933
References
more
  • Summaries
    All 42
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:58415 Dangond F, et al., Cloning and expression of a murine histone deacetylase 3 (mHdac3) cDNA and mapping to a region of conserved synteny between murine chromosome 18 and human chromosome 5. Mol Cell Biol Res Commun. 1999 Aug;2(2):91-6
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory