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Ints9 Gene Detail
Summary
  • Symbol
    Ints9
  • Name
    integrator complex subunit 9
  • Synonyms
    D14Ertd231e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098533
    NCBI Gene: 210925
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:65187494-65277284 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 33.81 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2412 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098533
 protein coding gene Chr14:65187494-65277284 (+)
129S1/SvImJ ENSMUSG00200029513
 protein coding gene Chr14:53799471-53889218 (+)
A/J ENSMUSG00195014214
 protein coding gene Chr14:53973565-54066170 (+)
AKR/J ENSMUSG00220029351
 protein coding gene Chr14:53314096-53406699 (+)
BALB/cJ ENSMUSG00180034339
 protein coding gene Chr14:53589730-53682339 (+)
C3H/HeJ ENSMUSG00175036960
 protein coding gene Chr14:55335806-55425556 (+)
C57BL/6NJ ENSMUSG00215018884
 protein coding gene Chr14:53520265-53610090 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019419
 protein coding gene Chr14:56103013-56195385 (+)
CAST/EiJ ENSTCUG00005037499
 protein coding gene Chr14:55235915-55324678 (+)
CBA/J ENSMUSG00210034283
 protein coding gene Chr14:53960979-54053579 (+)
DBA/2J ENSMUSG00185028926
 protein coding gene Chr14:59133660-59223401 (+)
FVB/NJ ENSMUSG00205035688
 protein coding gene Chr14:53476404-53569004 (+)
JF1/MsJ ENSUMUG00000034242
 protein coding gene Chr14:70309248-70395223 (+)
LP/J ENSMUSG00230036017
 protein coding gene Chr14:71163002-71252749 (+)
NOD/ShiLtJ ENSMUSG00190033041
 protein coding gene Chr14:53755700-53848296 (+)
NZO/HlLtJ ENSMUSG00225039393
 protein coding gene Chr14:61488669-61581265 (+)
PWK/PhJ ENSLUMG00010035711
 protein coding gene Chr14:53195438-53281776 (+)
SPRET/EiJ ENSMSPG00010027383
 protein coding gene Chr14:56670324-56760975 (+)
WSB/EiJ ENSIUOG00005037333
 protein coding gene Chr14:53194318-53284119 (+)



Homology
more
  • Human Ortholog
    INTS9, integrator complex subunit 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    INTS9, integrator complex subunit 9
  • Synonyms
    CPSF2L, INT9, RC74
  • Links
    NCBI Gene ID: 55756
    UniProt: Q9NV88

  • Chr Location
    8p21.1; chr8:28767661-28890242 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    41
  • GO References
    7
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    71
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 210925 NCBI Gene Model | MGI Sequence Detail 89791 C57BL/6J ±  kb
transcript NM_001253731 RefSeq | MGI Sequence Detail 2727 ZRU/MplStud  
polypeptide Q8K114 UniProt | EBI | MGI Sequence Detail 658 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 71
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2387175
References
more
  • Summaries
    All 45
    Gene Ontology 7
    Phenotypes 13
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory