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Cd1d2 Pseudogene Detail
Summary
  • Symbol
    Cd1d2
  • Name
    CD1d2 antigen
  • Synonyms
    CD1.2, Cd1b
Location &
Maps
more
  • Sequence Map
    Chr3:86893875-86896843 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 37.88 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    274 from dbSNP Build 142
  • Strain Annotations
    14
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107675
 polymorphic pseudogene Chr3:86893858-86897087 (+)
129S1/SvImJ ENSMUSG00200036569
 protein coding gene Chr3:83733156-83736386 (+)
A/J ENSMUSG00195052828
 protein coding gene Chr3:83752916-83756146 (+)
AKR/J ENSMUSG00220044447
 protein coding gene Chr3:83706446-83709676 (+)
BALB/cJ ENSMUSG00180047965
 protein coding gene Chr3:83876034-83879264 (+)
C3H/HeJ ENSMUSG00175038009
 protein coding gene Chr3:83679528-83682758 (+)
C57BL/6NJ ENSMUSG00215049819
 protein coding gene Chr3:84136022-84139251 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025129
 protein coding gene Chr3:79770749-79773642 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210047185
 protein coding gene Chr3:83823777-83827007 (+)
DBA/2J ENSMUSG00185048803
 protein coding gene Chr3:83964854-83968084 (+)
FVB/NJ ENSMUSG00205041501
 protein coding gene Chr3:82783947-82787176 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230029682
 protein coding gene Chr3:85953518-85956748 (+)
NOD/ShiLtJ ENSMUSG00190031583
 protein coding gene Chr3:84233424-84236653 (+)
NZO/HlLtJ ENSMUSG00225006512
 protein coding gene Chr3:88703029-88706259 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CD1D, CD1d molecule
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CD1D, CD1d molecule
  • Synonyms
    R3, R3G1
  • Links
    NCBI Gene ID: 912
    UniProt: P15813

  • Chr Location
    1q23.1; chr1:158178015-158186427 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CD1D associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    335 phenotype references
Homozygotes for a targeted null mutation ablating both Cd1d1 and Cd1d2 exhibit very few NK1.1-bearing T cells and an impaired interleukin 4 (IL4) response upon systemic T cell activation. Such mice are phenotypically similar to mutants lacking only Cd1d1.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    39
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    656
  • Tissues
    7
  • cDNA Data
    5
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    6
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 12480 NCBI Gene Model | MGI Sequence Detail 2969 C57BL/6J ±  kb
transcript NM_007640 RefSeq | MGI Sequence Detail 1246 Not Specified  
polypeptide P11610 UniProt | EBI | MGI Sequence Detail 336 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    Genomic 6
    cDNA 7

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-11979, MGD-MRK-1835, MGD-MRK-36250
References
more
  • Summaries
    All 377
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 6
    Phenotypes 335
  • Earliest
    J:17169 McMichael AJ, et al., A human thymocyte antigen defined by a hybrid myeloma monoclonal antibody. Eur J Immunol. 1979 Mar;9(3):205-10
  • Latest
    J:390505 Won HY, et al., Type I IFN-controlled Qa-2 expression identifies and maps the generation of Eomes(+) thymic innate CD8 T cells. iScience. 2026 Jul 17;29(7):116530
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory