Prototype QTL Controlled Vocabularies

• Disease
  
  • Bacterial and Fungal Disease
  • Viral Disease
  • Parasitic Disease
  • Neoplasms/Cancer
  • Musculoskeletal Disease
  • Digestive System Disease
  • Respiratory Tract Disease
  • Nervous System Disease
  • Eye Disease
  • Reproductive Tract Disease
  • Cardiovascular Disease
  • Circulatory and Lymphatic Disease
  • Skin and Connective Tissue Disease
  • Nutritional and Metabolic Disease
  • Endocrine Disease
  • Immunologic Disease
• Behavioral and Behavior Mechanisms
  
  • Drug response/tolerance
  • Emotionality
  • Adaptation/Orientation
  • Autism
  • Grooming
  • Sex behavior
  • Social behavior/Agression
  • Learning
  • Sleep
• Other
  • Physiology
  • Development

• Hereditary
  
• Induced
  
• Spontaneous
  
• Other
  

• Quantitative
  
• Semi-quantitative
  
• Qualitative
  
• Not reported
  

• backcross
  
• backcross, F1 female
  
• backcross, F1 male
  
• intercross, backcross-like
• backcross, recombinant progeny only
  
• backcross, recombinant progeny only, F1 female
  
• backcross, recominant progeny only, F1 male
  
• intercross
  
• single backcross
  
• other (must annotate record)
  

• all but the X/Y chromosomes
  
• only autosomal
  
• list of all chromosome #s for selection
  

This field will include the selection of "In" and "Not in" for excluding specific chromosomes. Similar to the form used on the Genetic Mapping Data Query Form

• C = chromatography
  
• DS = direct sequencing
  
• E = electrophoresis
  
• EA = enzyme activity
  
• FISH = fluorescent in situ hybridization
  
• H = histocompatibility
  
• I = immunological
  
• IF = isoelectric focusing
  
• IS = in situ hybridization
  
• M = molecular technique
  
• NA = Northern analysis
  
• O = other
  
• OC = overlapping clones
  
• PCR = polymerase chain reaction
  
• PCR - MS = microsatellites
  
• PFGE = pulsed-field gel electrophoresis
  
• RA = restriction analysis
  
• REP = reported elsewhere
  
• S = Southern analysis
  
• SR = susceptibility/resistance
  
• TE = transposable elements
  
• V = visible phenotype
  
• VSS = viral sequence signature probing
  

• MapMaker/QTL
  
• QTL Cartographer
  
• MapManager QTL
  
• MQTL
  
• General statistical package (SPSS, SAS, BMDP, etc.)
  

• Output from QTL mapping software package
• Nonparametric Chi-square test
  
• Single-factor ANOVA /linear regression/ Student's t test
  
• Product-moment correlation (Pearson's correlation)
  
• Nonparametric rank-sum test
  
• Bayesian
  
• Fisher's combined probability test
  
• Likelihood ratio (LOD and similar tests)
  
• Other
  
• Not reported
  

• Output from QTL mapping software package
• Maximum likelihood
• Multiple regression
• Moments method
• Bayesian
• Other
• Not reported
• NULL

• Additive
  
• Dominant
  
• Recessive
  
• Free model
  

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