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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Gfap glial fibrillary acidic protein MGI:95697 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs27053916 MPD | dbSNP | MGI SNP Detail | Chr11:102748052 | f | Gfap : Locus-Region | 1 | SNP | T | G | G | G | G | G | G | G | G | G | G | G/T | ||||||
| rs27053915 MPD | dbSNP | MGI SNP Detail | Chr11:102748153 | f | Gfap : Locus-Region | 1 | SNP | C | T | T | C | T | T | T | T | T | T | T | C/T | ||||||
| rs27053914 MPD | dbSNP | MGI SNP Detail | Chr11:102748182 | f | Gfap : Locus-Region | 1 | SNP | C | C | C | T | C | C | T | T | C | C/T | ||||||||
| rs27053913 MPD | dbSNP | MGI SNP Detail | Chr11:102748211 | f | Gfap : Locus-Region | 1 | SNP | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | ||||
| rs27053912 MPD | dbSNP | MGI SNP Detail | Chr11:102748285 | f | Gfap : Locus-Region | 1 | SNP | C | T | T | T | T | T | T | C | T | T | T | T | C/T | |||||
| rs27053911 MPD | dbSNP | MGI SNP Detail | Chr11:102748399 | f | Gfap : Locus-Region | 1 | SNP | T | C | C | C | C | C | C | C | C | C | C | C/T | ||||||
| rs27053910 MPD | dbSNP | MGI SNP Detail | Chr11:102748406 | f | Gfap : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | A/G | |||||
| rs27053909 MPD | dbSNP | MGI SNP Detail | Chr11:102748975 | f | Gfap : Locus-Region | 2 | SNP | A | A | C | C | C | A | A | C | A | C | C | A | A | A | A/C | |||
| rs27053908 MPD | dbSNP | MGI SNP Detail | Chr11:102749129 | f | Gfap : Locus-Region | 2 | SNP | G | G | G | A | A | A | G | G | A | G | A | G | A | G | G | G | A/G | |
| rs27053907 MPD | dbSNP | MGI SNP Detail | Chr11:102749145 | f | Gfap : Locus-Region | 1 | SNP | T | T | T | T | A | T | T | A | A | A/T | ||||||||
| rs27053906 MPD | dbSNP | MGI SNP Detail | Chr11:102749156 | f | Gfap : Locus-Region | 1 | SNP | G | G | G | G | T | G | G | G | G | G | G | G | G | G/T | ||||
| rs27053905 MPD | dbSNP | MGI SNP Detail | Chr11:102749178 | f | Gfap : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | C | C | T | C/T | |||||
| rs27053904 MPD | dbSNP | MGI SNP Detail | Chr11:102749200 | f | Gfap : Locus-Region | 1 | SNP | T | C | C | C | C | C | C | C | C | C | C | C | C | C/T | ||||
| rs27053903 MPD | dbSNP | MGI SNP Detail | Chr11:102749296 | f | Gfap : Locus-Region | 2 | SNP | C | C | C | T | T | T | C | T | C | T | T | C | C | C/T | ||||
| rs27053902 MPD | dbSNP | MGI SNP Detail | Chr11:102749339 | f | Gfap : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C/T | |||||||
| rs27053901 MPD | dbSNP | MGI SNP Detail | Chr11:102749390 | f | Gfap : Locus-Region | 2 | SNP | A | A | A | G | G | G | G | A | G | G | G | G | G | G | G | A/G | ||
| rs27053900 MPD | dbSNP | MGI SNP Detail | Chr11:102749436 | f | Gfap : Locus-Region | 2 | SNP | A | A | A | T | T | T | T | A | T | T | T | T | T | T | T | A/T | ||
| rs27053899 MPD | dbSNP | MGI SNP Detail | Chr11:102749518 | f | Gfap : Locus-Region | 1 | SNP | T | C | C | C | C | C | C | T | C | C | C | C | C/T | |||||
| rs27053898 MPD | dbSNP | MGI SNP Detail | Chr11:102749837 | f | Gfap : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | C/T | ||||||
| rs29483156 MPD | dbSNP | MGI SNP Detail | Chr11:102749962 | f | Gfap : Locus-Region | 1 | SNP | T | C | T | C/T | ||||||||||||||
| rs27053897 MPD | dbSNP | MGI SNP Detail | Chr11:102749967 | f | Gfap : Locus-Region | 1 | SNP | G | C | G | C | G | C | G | C | G | G | C/G | |||||||
| rs27053896 MPD | dbSNP | MGI SNP Detail | Chr11:102750024 | f | Gfap : Coding-NonSynonymous | 2 | SNP | C | G | G | G | C | C | G | C | G | G | C | C | C | C/G | ||||
| rs27053895 MPD | dbSNP | MGI SNP Detail | Chr11:102750099 | f | Gfap : Intron | 1 | SNP | G | G | G | T | G | G | G | G | G | G | G | G | G/T | |||||
| rs27053894 MPD | dbSNP | MGI SNP Detail | Chr11:102750684 | f | Gfap : Intron | 1 | SNP | C | C | C | T | C | C | C | C | C | C | C | C/T | ||||||
| rs27053893 MPD | dbSNP | MGI SNP Detail | Chr11:102750972 | f | Gfap : Intron | 1 | SNP | C | T | T | T | T | C | C/T | |||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27053892 MPD | dbSNP | MGI SNP Detail | Chr11:102751010 | f | Gfap : Intron | 1 | SNP | T | C | T | C | T | C | C | T | T | C/T | ||||||||
| rs27053891 MPD | dbSNP | MGI SNP Detail | Chr11:102751064 | f | Gfap : Intron | 1 | SNP | C | T | T | C | T | C | T | T | C | C | T | C/T | ||||||
| rs27053890 MPD | dbSNP | MGI SNP Detail | Chr11:102751215 | f | Gfap : Intron | 1 | SNP | T | C | C | C | C | C | C | C | C | C | C | C | C | C/T | ||||
| rs27053889 MPD | dbSNP | MGI SNP Detail | Chr11:102751468 | f | Gfap : Intron | 1 | SNP | A | A | T | A | T | T | A | T | A/T | |||||||||
| rs27053888 MPD | dbSNP | MGI SNP Detail | Chr11:102751726 | f | Gfap : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | A | T | A/T | ||||||
| rs27053887 MPD | dbSNP | MGI SNP Detail | Chr11:102751846 | f | Gfap : Intron | 1 | SNP | G | A | G | G | A | G | A | G | A | G | G | A | A/G | |||||
| rs27053886 MPD | dbSNP | MGI SNP Detail | Chr11:102752136 | f | Gfap : Intron | 1 | SNP | G | A | A | G | A | G | A | G | A | G | G | A | A/G | |||||
| rs27053885 MPD | dbSNP | MGI SNP Detail | Chr11:102752203 | f | Gfap : Intron | 1 | SNP | T | C | T | C | T | T | C | C | T | C/T | ||||||||
| rs27053884 MPD | dbSNP | MGI SNP Detail | Chr11:102752532 | f | Gfap : Intron | 1 | SNP | A | G | G | A | G | A | G | G | A | A | A | A/G | ||||||
| rs27053883 MPD | dbSNP | MGI SNP Detail | Chr11:102752789 | f | Gfap : Intron | 1 | SNP | T | G | G | T | G | T | G | G | T | T | T | G/T | ||||||
| rs27053882 MPD | dbSNP | MGI SNP Detail | Chr11:102753035 | f | Gfap : Intron | 1 | SNP | A | G | G | G | G | G | G | G | G | G | A/G | |||||||
| rs27053881 MPD | dbSNP | MGI SNP Detail | Chr11:102753096 | f | Gfap : Intron | 1 | SNP | G | G | G | G | G | G | A | G | G | A | A | G | A/G | |||||
| rs27053880 MPD | dbSNP | MGI SNP Detail | Chr11:102753980 | f | Gfap : Intron | 1 | SNP | A | G | G | G | G | G | G | G | G | G | A/G | |||||||
| rs27053879 MPD | dbSNP | MGI SNP Detail | Chr11:102754011 | f | Gfap : Intron | 1 | SNP | T | T | T | T | T | A | T | A | T | T | A/T | |||||||
| rs27053878 MPD | dbSNP | MGI SNP Detail | Chr11:102754513 | f | Gfap : Coding-Synonymous | 1 | SNP | T | C | C | T | C | C | C | C | T | C | C | C | C | C/T | ||||
| rs27053877 MPD | dbSNP | MGI SNP Detail | Chr11:102754554 | f | Gfap : Coding-Synonymous | 1 | SNP | T | G | G | T | G | G | G | G | T | G | G | G | G | G/T | ||||
| rs27053876 MPD | dbSNP | MGI SNP Detail | Chr11:102754759 | f | Gfap : Intron | 1 | SNP | C | T | T | T | T | T | T | T | T | T | C/T | |||||||
| rs27053875 MPD | dbSNP | MGI SNP Detail | Chr11:102754796 | f | Gfap : Coding-Synonymous | 1 | SNP | G | A | A | A | A | A | A | G | A | A | A | A/G | ||||||
| rs27053874 MPD | dbSNP | MGI SNP Detail | Chr11:102755058 | f | Gfap : Intron | 1 | SNP | C | G | G | C | G | G | G | G | C | G | G | G | C/G | |||||
| rs27053873 MPD | dbSNP | MGI SNP Detail | Chr11:102755085 | f | Gfap : Intron | 1 | SNP | G | G | G | G | T | G | G | G | G | G | G | G | G/T | |||||
| rs27053872 MPD | dbSNP | MGI SNP Detail | Chr11:102755122 | f | Gfap : Intron | 1 | SNP | G | A | A | A | A | G | A | A | G | G | A | A/G | ||||||
| rs27053871 MPD | dbSNP | MGI SNP Detail | Chr11:102755145 | f | Gfap : Intron | 1 | SNP | T | C | C | C | C | T | C | C | T | T | C | C/T | ||||||
| rs27053870 MPD | dbSNP | MGI SNP Detail | Chr11:102755195 | f | Gfap : Intron | 1 | SNP | C | T | T | C | T | T | C | T | C | C | T | C/T | ||||||
| rs27053869 MPD | dbSNP | MGI SNP Detail | Chr11:102755216 | f | Gfap : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | A | G | A/G | ||||||
| rs27053868 MPD | dbSNP | MGI SNP Detail | Chr11:102755248 | f | Gfap : Intron | 1 | SNP | T | C | C | C | C | C | C | C | C | C | C/T | |||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27037367 MPD | dbSNP | MGI SNP Detail | Chr11:102755330 | f | Gfap : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||
| rs27037366 MPD | dbSNP | MGI SNP Detail | Chr11:102755464 | f | Gfap : Intron | 1 | SNP | G | A | A | G | G | G | A | G | A | G | G | G | G | A/G | ||||
| rs27037365 MPD | dbSNP | MGI SNP Detail | Chr11:102755617 | f | Gfap : Intron | 1 | SNP | C | C | T | T | C | T | C | T | T | T | C | T | T | T | C/T | |||
| rs27037364 MPD | dbSNP | MGI SNP Detail | Chr11:102755746 | f | Gfap : Coding-Synonymous | 1 | SNP | A | A | G | G | A | G | A | G | A | G | A | A | A | G | A/G | |||
| rs27037363 MPD | dbSNP | MGI SNP Detail | Chr11:102755773 | f | Gfap : Coding-Synonymous | 1 | SNP | C | C | C | C | C | A | C | C | C | C | C | C | C | C | A/C | |||
| rs27037362 MPD | dbSNP | MGI SNP Detail | Chr11:102755809 | f | Gfap : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | A | G | G | A | A | G | A/G | ||||
| rs27037361 MPD | dbSNP | MGI SNP Detail | Chr11:102755917 | f | Gfap : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||
| rs27037360 MPD | dbSNP | MGI SNP Detail | Chr11:102755926 | f | Gfap : Intron | 1 | SNP | T | T | C | C | T | C | C | C | C | T | C | C | C | C/T | ||||
| rs27037359 MPD | dbSNP | MGI SNP Detail | Chr11:102755939 | f | Gfap : Intron | 1 | SNP | C | C | T | T | C | T | C | T | C | C | C | T | C/T | |||||
| rs27037358 MPD | dbSNP | MGI SNP Detail | Chr11:102756257 | f | Gfap : Intron | 1 | SNP | A | G | A | G | A | G | G | A | A/G | |||||||||
| rs29439461 MPD | dbSNP | MGI SNP Detail | Chr11:102756427 | f | Gfap : Intron | 1 | SNP | T | C | T | C/T | ||||||||||||||
| rs29404448 MPD | dbSNP | MGI SNP Detail | Chr11:102756452 | f | Gfap : Intron | 1 | SNP | C | T | C | C/T | ||||||||||||||
| rs27037357 MPD | dbSNP | MGI SNP Detail | Chr11:102756578 | f | Gfap : Intron | 1 | SNP | T | T | T | T | T | T | T | A | T | T | T | T | T | T | A/T | |||
| rs27037356 MPD | dbSNP | MGI SNP Detail | Chr11:102756639 | f | Gfap : Intron | 1 | SNP | T | A | A | T | A | A | T | A | T | T | T | A | A/T | |||||
| rs27037355 MPD | dbSNP | MGI SNP Detail | Chr11:102756856 | f | Gfap : Coding-Synonymous | 1 | SNP | T | T | A | A | T | T | T | A | A | A | T | A | A | A | A | A/T | ||
| rs27037354 MPD | dbSNP | MGI SNP Detail | Chr11:102756895 | f | Gfap : Intron | 1 | SNP | A | G | G | A | G | A | G | G | G | A | G | G | G | G | A/G | |||
| rs27037353 MPD | dbSNP | MGI SNP Detail | Chr11:102756978 | f | Gfap : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | A | A | G | A/G | ||
| rs27037352 MPD | dbSNP | MGI SNP Detail | Chr11:102757168 | f | Gfap : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | |||
| rs27037351 MPD | dbSNP | MGI SNP Detail | Chr11:102757382 | f | Gfap : Intron | 1 | SNP | T | T | C | C | T | C | T | C | C | C | T | C | C | C | C/T | |||
| rs27037350 MPD | dbSNP | MGI SNP Detail | Chr11:102757467 | f | Gfap : Intron | 1 | SNP | C | C | T | T | C | T | C | T | C | T | C | T | C | C | T | C/T | ||
| rs27037349 MPD | dbSNP | MGI SNP Detail | Chr11:102757567 | f | Gfap : Intron | 1 | SNP | C | C | C | C | C | T | C | T | C/T | |||||||||
| rs27037348 MPD | dbSNP | MGI SNP Detail | Chr11:102757606 | f | Gfap : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||
| rs27037347 MPD | dbSNP | MGI SNP Detail | Chr11:102757637 | f | Gfap : Intron | 1 | SNP | G | G | C | C | C | C | C | C | C/G | |||||||||
| rs27037346 MPD | dbSNP | MGI SNP Detail | Chr11:102757760 | f | Gfap : Intron | 1 | SNP | T | T | C | C | T | C | T | C | T | C | T | C | T | C | C/T | |||
| rs27037345 MPD | dbSNP | MGI SNP Detail | Chr11:102757845 | f | Gfap : Intron | 1 | SNP | T | T | T | C | T | T | T | T | T | T | C/T | |||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27037344 MPD | dbSNP | MGI SNP Detail | Chr11:102757857 | f | Gfap : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A/G | ||||||||
| rs27037343 MPD | dbSNP | MGI SNP Detail | Chr11:102757925 | f | Gfap : Intron | 1 | SNP | G | C | C | C | G | C | C | G | C | C/G | ||||||||
| rs27037342 MPD | dbSNP | MGI SNP Detail | Chr11:102757931 | f | Gfap : Intron | 1 | SNP | C | C | T | T | C | C | T | C | T | C | T | C | C | T | C/T | |||
| rs27037341 MPD | dbSNP | MGI SNP Detail | Chr11:102758011 | f | Gfap : Coding-NonSynonymous | 1 | SNP | G | G | A | A | G | G | G | A | G | A | G | A | G | G | A | A/G | ||
| rs27037340 MPD | dbSNP | MGI SNP Detail | Chr11:102758240 | f | Gfap : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||
| rs27037339 MPD | dbSNP | MGI SNP Detail | Chr11:102758326 | f | Gfap : Coding-Synonymous | 1 | SNP | G | G | A | A | G | G | G | A | G | A | G | A | G | G | A | A/G | ||
| rs27037338 MPD | dbSNP | MGI SNP Detail | Chr11:102758350 | f | Gfap : Coding-Synonymous | 2 | SNP | A | A | A | G | G | A | G | G | A | G | G | G | A | G | G | G | A/G | |
| rs27037337 MPD | dbSNP | MGI SNP Detail | Chr11:102758482 | f | Gfap : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | T | T | C | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/22/2013 MGI 5.13 |
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