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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Fmr1 fragile X mental retardation syndrome 1 MGI:95564 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs8238954 MPD | dbSNP | MGI SNP Detail | ChrX:65932536 | r | Fmr1 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | A/G | |||||||||||||
| rs8237010 MPD | dbSNP | MGI SNP Detail | ChrX:65932832 | r | Fmr1 : Intron | 2 | SNP | C | C | C | C | T | C | C | C | C/T | |||||||||||||
| rs8238958 MPD | dbSNP | MGI SNP Detail | ChrX:65933532 | r | Fmr1 : Intron | 1 | IN-DEL | T | - | -/T | |||||||||||||||||||
| rs8238957 MPD | dbSNP | MGI SNP Detail | ChrX:65933539 | r | Fmr1 : Intron | 1 | SNP | T | C | T | T | T | C | C | C | C/T | |||||||||||||
| rs8238956 MPD | dbSNP | MGI SNP Detail | ChrX:65933653 | r | Fmr1 : Intron | 1 | IN-DEL | A | A | A | A | - | A | A | A | -/A | |||||||||||||
| rs8238955 MPD | dbSNP | MGI SNP Detail | ChrX:65933672 | r | Fmr1 : Intron | 1 | SNP | T | T | T | T | G | T | T | T | G/T | |||||||||||||
| rs8238959 MPD | dbSNP | MGI SNP Detail | ChrX:65933931 | r | Fmr1 : Intron | 1 | SNP | T | T | T | G | T | T | T | G/T | ||||||||||||||
| rs29049185 MPD | dbSNP | MGI SNP Detail | ChrX:65937699 | f | Fmr1 : Intron | 1 | SNP | C | A | C | A/C | ||||||||||||||||||
| rs31695296 MPD | dbSNP | MGI SNP Detail | ChrX:65938274 | f | Fmr1 : Intron | 1 | SNP | T | C | T | C/T | ||||||||||||||||||
| rs30677435 MPD | dbSNP | MGI SNP Detail | ChrX:65941080 | f | Fmr1 : Intron | 1 | SNP | A | G | A | A/G | ||||||||||||||||||
| rs30970247 MPD | dbSNP | MGI SNP Detail | ChrX:65941081 | f | Fmr1 : Intron | 1 | SNP | G | A | G | A/G | ||||||||||||||||||
| rs30677702 MPD | dbSNP | MGI SNP Detail | ChrX:65942291 | f | Fmr1 : Intron | 1 | SNP | C | T | C | C | C/T | |||||||||||||||||
| rs30869191 MPD | dbSNP | MGI SNP Detail | ChrX:65943539 | f | Fmr1 : Intron | 1 | SNP | T | T | A | T | A/T | |||||||||||||||||
| rs31016348 MPD | dbSNP | MGI SNP Detail | ChrX:65943855 | f | Fmr1 : Intron | 1 | SNP | T | T | A | T | A/T | |||||||||||||||||
| rs31695295 MPD | dbSNP | MGI SNP Detail | ChrX:65944786 | f | Fmr1 : Intron | 1 | SNP | A | A | A | T | A | A | A/T | |||||||||||||||
| rs31695294 MPD | dbSNP | MGI SNP Detail | ChrX:65945253 | f | Fmr1 : Intron | 1 | SNP | T | C | T | C | T | T | T | T | T | T | C | C | T | T | C/T | |||||||
| rs29049184 MPD | dbSNP | MGI SNP Detail | ChrX:65945480 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | A | G | G | A | A | A | A | A | G | A/G | |||||||
| rs29048673 MPD | dbSNP | MGI SNP Detail | ChrX:65945512 | f | Fmr1 : Intron | 2 | SNP | C | C | C | C | C | T | C | T | T | C | C | C | C | C | T | C/T | ||||||
| rs29048672 MPD | dbSNP | MGI SNP Detail | ChrX:65945596 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | A | G | G | G | G | G | A | A/G | ||||||
| rs31694693 MPD | dbSNP | MGI SNP Detail | ChrX:65947831 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | A | A | A | A | A/T | ||||||
| rs29048671 MPD | dbSNP | MGI SNP Detail | ChrX:65947937 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||||||
| rs29048670 MPD | dbSNP | MGI SNP Detail | ChrX:65948042 | f | Fmr1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | ||||||
| rs29048669 MPD | dbSNP | MGI SNP Detail | ChrX:65949931 | f | Fmr1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C/T | ||||||
| rs31694692 MPD | dbSNP | MGI SNP Detail | ChrX:65950531 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G/T | ||||||
| rs29048668 MPD | dbSNP | MGI SNP Detail | ChrX:65950774 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs8250999 MPD | dbSNP | MGI SNP Detail | ChrX:65951134 | f | Fmr1 : Coding-Synonymous | 1 | SNP | C | C | C | C | T | C | C | C/T | ||||||||||||||
| rs8251000 MPD | dbSNP | MGI SNP Detail | ChrX:65951175 | f | Fmr1 : Intron | 1 | SNP | G | T | T | T | T | T | T | G/T | ||||||||||||||
| rs8251001 MPD | dbSNP | MGI SNP Detail | ChrX:65951212 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | T | A | A | A/T | ||||||||||||||
| rs8251002 MPD | dbSNP | MGI SNP Detail | ChrX:65951238 | f | Fmr1 : Intron | 1 | IN-DEL | T | T | T | - | T | T | T | T | -/T | |||||||||||||
| rs8251003 MPD | dbSNP | MGI SNP Detail | ChrX:65951241 | f | Fmr1 : Intron | 1 | IN-DEL | - | - | T | - | T | - | - | -/T | ||||||||||||||
| rs8251004 MPD | dbSNP | MGI SNP Detail | ChrX:65951278 | f | Fmr1 : Intron | 1 | SNP | G | G | G | C | G | G | C/G | |||||||||||||||
| rs31694691 MPD | dbSNP | MGI SNP Detail | ChrX:65951644 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A/C | ||||||
| rs29048667 MPD | dbSNP | MGI SNP Detail | ChrX:65951880 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | C | A | A | A | A | C | A | A/C | ||||||
| rs29048666 MPD | dbSNP | MGI SNP Detail | ChrX:65952075 | f | Fmr1 : Intron | 1 | SNP | G | A | G | A | A | A | G | G | A | A | G | G | A | A | A | A/G | ||||||
| rs29048665 MPD | dbSNP | MGI SNP Detail | ChrX:65953483 | f | Fmr1 : Intron | 1 | SNP | T | C | T | C | C | C | T | T | C | C | T | T | C | C | T | C/T | ||||||
| rs29048664 MPD | dbSNP | MGI SNP Detail | ChrX:65953503 | f | Fmr1 : Intron | 1 | SNP | A | C | A | C | C | C | A | A | C | C | A | A | C | C | A | A/C | ||||||
| rs29048133 MPD | dbSNP | MGI SNP Detail | ChrX:65953676 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||||||
| rs31694690 MPD | dbSNP | MGI SNP Detail | ChrX:65953972 | f | Fmr1 : Intron | 1 | SNP | A | G | A | A | A | A | A | A/G | ||||||||||||||
| rs31694689 MPD | dbSNP | MGI SNP Detail | ChrX:65955090 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||
| rs29048132 MPD | dbSNP | MGI SNP Detail | ChrX:65955151 | f | Fmr1 : Intron | 1 | SNP | G | A | G | A | A | A | G | G | A | A | G | G | A | A | A | A/G | ||||||
| rs31694688 MPD | dbSNP | MGI SNP Detail | ChrX:65955831 | f | Fmr1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||
| rs31694687 MPD | dbSNP | MGI SNP Detail | ChrX:65955865 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | T | T | A | T | T | T | T | A/T | ||||||||||
| rs31694686 MPD | dbSNP | MGI SNP Detail | ChrX:65955875 | f | Fmr1 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | A/C | ||||||
| rs29048131 MPD | dbSNP | MGI SNP Detail | ChrX:65956056 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | G | C | G | C/G | ||||||
| rs29048130 MPD | dbSNP | MGI SNP Detail | ChrX:65956144 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | C/T | ||||||
| rs29048129 MPD | dbSNP | MGI SNP Detail | ChrX:65956526 | f | Fmr1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||
| rs29048128 MPD | dbSNP | MGI SNP Detail | ChrX:65957078 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||||||
| rs29048127 MPD | dbSNP | MGI SNP Detail | ChrX:65957401 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | ||||||
| rs29048126 MPD | dbSNP | MGI SNP Detail | ChrX:65957469 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||
| rs29048125 MPD | dbSNP | MGI SNP Detail | ChrX:65957613 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | G/T | ||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31694685 MPD | dbSNP | MGI SNP Detail | ChrX:65958197 | f | Fmr1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | A | T | A/T | |||||||
| rs31694684 MPD | dbSNP | MGI SNP Detail | ChrX:65958334 | f | Fmr1 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | C | A | A | A | A | C | A | A/C | ||||||
| rs29048124 MPD | dbSNP | MGI SNP Detail | ChrX:65959333 | f | Fmr1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||||
| rs8250997 MPD | dbSNP | MGI SNP Detail | ChrX:65968881 | f | Fmr1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | T | C | C/T | ||||||||||||||
| rs8250998 MPD | dbSNP | MGI SNP Detail | ChrX:65969007 | f | Fmr1 : mRNA-UTR | 1 | SNP | C | C | C | C | A | C | A | A/C |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 06/05/2013 MGI 5.13 |
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