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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Mmp1a matrix metallopeptidase 1a (interstitial collagenase) MGI:1933846 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30613449 MPD | dbSNP | MGI SNP Detail | Chr9:7462313 | r | Mmp1a : Locus-Region | 2 | SNP | G | G | A | G | A | A | G | A | A | G | A | G | A | G | G | A/G | |||
| rs36949123 MPD | dbSNP | MGI SNP Detail | Chr9:7462325 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C | C/G | ||||
| rs36821951 MPD | dbSNP | MGI SNP Detail | Chr9:7462413 | f | Mmp1a : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | G | T | T | T | T | T | G/T | ||||
| rs36796903 MPD | dbSNP | MGI SNP Detail | Chr9:7462461 | f | Mmp1a : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A/G | ||||
| rs36282195 MPD | dbSNP | MGI SNP Detail | Chr9:7462565 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C/G | |||||
| rs37754456 MPD | dbSNP | MGI SNP Detail | Chr9:7463256 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||
| rs36312511 MPD | dbSNP | MGI SNP Detail | Chr9:7463338 | f | Mmp1a : Locus-Region | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | A | A | A | A/T | ||||
| rs36239457 MPD | dbSNP | MGI SNP Detail | Chr9:7463431 | f | Mmp1a : Locus-Region | 2 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | ? | C/G | ||||
| rs37895568 MPD | dbSNP | MGI SNP Detail | Chr9:7463921 | f | Mmp1a : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | ||||
| rs36262401 MPD | dbSNP | MGI SNP Detail | Chr9:7464010 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | T | C | C/T | ||||
| rs37945421 MPD | dbSNP | MGI SNP Detail | Chr9:7464202 | f | Mmp1a : Coding-Synonymous | 1 | SNP | A | T | T | T | T | T | T | T | T | T | T | T | T | T | A/T | ||||
| rs38084772 MPD | dbSNP | MGI SNP Detail | Chr9:7464309 | f | Mmp1a : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | ||||
| rs38028208 MPD | dbSNP | MGI SNP Detail | Chr9:7464585 | f | Mmp1a : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C/T | ||||
| rs38828205 MPD | dbSNP | MGI SNP Detail | Chr9:7464614 | f | Mmp1a : Intron | 1 | SNP | G | G | G | G | G | G | G | G | T | G | G | G | G | G | G/T | ||||
| rs36239696 MPD | dbSNP | MGI SNP Detail | Chr9:7464896 | f | Mmp1a : Coding-Synonymous | 2 | SNP | C | C | C | C | C | C | C | C | A | C | C | C | C | A | C | A/C | |||
| rs36238329 MPD | dbSNP | MGI SNP Detail | Chr9:7465068 | f | Mmp1a : Coding-NonSynonymous | 2 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||
| rs36239046 MPD | dbSNP | MGI SNP Detail | Chr9:7465102 | f | Mmp1a : Coding-NonSynonymous | 2 | SNP | A | A | A | A | A | A | A | A | T | A | A | A | A | A | A/T | ||||
| rs36806064 MPD | dbSNP | MGI SNP Detail | Chr9:7465144 | f | Mmp1a : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C/T | |||||
| rs36239410 MPD | dbSNP | MGI SNP Detail | Chr9:7465161 | f | Mmp1a : Intron | 2 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | ||||
| rs36449133 MPD | dbSNP | MGI SNP Detail | Chr9:7465843 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | G | C | C | G | C | C | C | C | C | C/G | ||||
| rs37712467 MPD | dbSNP | MGI SNP Detail | Chr9:7465855 | f | Mmp1a : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | C/T | |||||
| rs36572861 MPD | dbSNP | MGI SNP Detail | Chr9:7466733 | f | Mmp1a : Intron | 1 | SNP | T | T | T | C | T | C | T | C/T | |||||||||||
| rs39172001 MPD | dbSNP | MGI SNP Detail | Chr9:7466856 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||
| rs36259681 MPD | dbSNP | MGI SNP Detail | Chr9:7467390 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | A/G | ||||
| rs38167523 MPD | dbSNP | MGI SNP Detail | Chr9:7467574 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C/T | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs38048049 MPD | dbSNP | MGI SNP Detail | Chr9:7467919 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A | A | A | A/G | ||||||
| rs37312789 MPD | dbSNP | MGI SNP Detail | Chr9:7467980 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | T | C | C | T | C | C | C | C | C | C/T | |||||
| rs37582294 MPD | dbSNP | MGI SNP Detail | Chr9:7468213 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C/T | ||||
| rs30585272 MPD | dbSNP | MGI SNP Detail | Chr9:7468922 | r | Mmp1a : Intron | 1 | SNP | C | A | C | C | A/C | ||||||||||||||
| rs36663028 MPD | dbSNP | MGI SNP Detail | Chr9:7473290 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C/T | ||||||
| rs6164555 MPD | dbSNP | MGI SNP Detail | Chr9:7473679 | f | Mmp1a : Intron | 1 | SNP | C | T | C/T | ||||||||||||||||
| rs6164565 MPD | dbSNP | MGI SNP Detail | Chr9:7473680 | f | Mmp1a : Intron | 1 | SNP | C | G | C/G | ||||||||||||||||
| rs6164568 MPD | dbSNP | MGI SNP Detail | Chr9:7473687 | f | Mmp1a : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs37726939 MPD | dbSNP | MGI SNP Detail | Chr9:7473827 | f | Mmp1a : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C/T | |||||
| rs6165555 MPD | dbSNP | MGI SNP Detail | Chr9:7473840 | f | Mmp1a : Intron | 1 | SNP | C | G | C/G | ||||||||||||||||
| rs6166078 MPD | dbSNP | MGI SNP Detail | Chr9:7473922 | f | Mmp1a : Intron | 2 | SNP | A | A | A | A | A | A | A | C | A | A | C | A | A | A | A | C | A | A/C | |
| rs6166175 MPD | dbSNP | MGI SNP Detail | Chr9:7473985 | f | Mmp1a : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs6166176 MPD | dbSNP | MGI SNP Detail | Chr9:7473987 | f | Mmp1a : Intron | 1 | SNP | T | G | G/T | ||||||||||||||||
| rs6180425 MPD | dbSNP | MGI SNP Detail | Chr9:7474280 | f | Mmp1a : Intron | 1 | SNP | T | A | A/T | ||||||||||||||||
| rs36750978 MPD | dbSNP | MGI SNP Detail | Chr9:7474463 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | C | C | A | C | C | C | A/C | |||||||
| rs36420600 MPD | dbSNP | MGI SNP Detail | Chr9:7474541 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A/G | |||||
| rs37071155 MPD | dbSNP | MGI SNP Detail | Chr9:7475209 | f | Mmp1a : Intron | 1 | SNP | C | C | C | C | C | C | C | C | G | C | C | C | C | C/G | |||||
| rs37069428 MPD | dbSNP | MGI SNP Detail | Chr9:7475243 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A/G | ||||||
| rs36394604 MPD | dbSNP | MGI SNP Detail | Chr9:7475320 | f | Mmp1a : Coding-NonSynonymous | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | C/T | ||||
| rs38514675 MPD | dbSNP | MGI SNP Detail | Chr9:7475560 | f | Mmp1a : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A | A/G | |||||||
| rs37536060 MPD | dbSNP | MGI SNP Detail | Chr9:7475784 | f | Mmp1a : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | |||
| rs36881717 MPD | dbSNP | MGI SNP Detail | Chr9:7475860 | f | Mmp1a : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | |||||
| rs37086224 MPD | dbSNP | MGI SNP Detail | Chr9:7476266 | f | Mmp1a : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||
| rs37303166 MPD | dbSNP | MGI SNP Detail | Chr9:7476673 | f | Mmp1a : mRNA-UTR | 1 | SNP | T | C | T | T | T | T | C | T | T | C | C | C/T | |||||||
| rs36703190 MPD | dbSNP | MGI SNP Detail | Chr9:7476818 | f | Mmp1a : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | A/G | ||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs38474970 MPD | dbSNP | MGI SNP Detail | Chr9:7476905 | f | Mmp1a : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | T | G | G | G | G | G | G/T | |||||
| rs36797746 MPD | dbSNP | MGI SNP Detail | Chr9:7477281 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | C | G | C | C | C | C/G | ||||||||
| rs36273224 MPD | dbSNP | MGI SNP Detail | Chr9:7477349 | f | Mmp1a : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | ||||
| rs37839020 MPD | dbSNP | MGI SNP Detail | Chr9:7477360 | f | Mmp1a : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | A | C | A | A | A | A | A/C |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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