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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Chrna2 cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) MGI:87886 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs31062430 MPD | dbSNP | MGI SNP Detail | Chr14:66757949 | f | Chrna2 : Locus-Region | 1 | SNP | T | T | T | C | T | T | C/T | ||||||||||||
| rs31062428 MPD | dbSNP | MGI SNP Detail | Chr14:66758010 | f | Chrna2 : Locus-Region | 1 | SNP | G | G | G | G | A | G | G | A/G | |||||||||||
| rs30801101 MPD | dbSNP | MGI SNP Detail | Chr14:66759356 | f | Chrna2 : Locus-Region | 1 | SNP | C | C | G | C | C/G | ||||||||||||||
| rs31062426 MPD | dbSNP | MGI SNP Detail | Chr14:66759524 | f | Chrna2 : Locus-Region | 1 | SNP | A | A | A | T | A | T | A/T | ||||||||||||
| rs31062424 MPD | dbSNP | MGI SNP Detail | Chr14:66759549 | f | Chrna2 : Locus-Region | 1 | SNP | C | T | C | T | T | C/T | |||||||||||||
| rs31061372 MPD | dbSNP | MGI SNP Detail | Chr14:66759965 | f | Chrna2 : Intron | 1 | SNP | A | A | A | G | A | G | G | A | A/G | ||||||||||
| rs31061370 MPD | dbSNP | MGI SNP Detail | Chr14:66760080 | f | Chrna2 : Intron | 1 | SNP | C | C | G | C | C | C/G | |||||||||||||
| rs31061368 MPD | dbSNP | MGI SNP Detail | Chr14:66760185 | f | Chrna2 : Intron | 1 | SNP | G | G | G | G | A | G | G | A | A | A/G | |||||||||
| rs31061367 MPD | dbSNP | MGI SNP Detail | Chr14:66760795 | f | Chrna2 : Intron | 1 | SNP | A | A | A | A | A | A | C | A | A | A/C | |||||||||
| rs31061365 MPD | dbSNP | MGI SNP Detail | Chr14:66760896 | f | Chrna2 : Intron | 1 | SNP | G | G | G | G | G | G | T | G | G/T | ||||||||||
| rs31060493 MPD | dbSNP | MGI SNP Detail | Chr14:66760924 | f | Chrna2 : Intron | 1 | SNP | A | G | A | A | A | A/G | |||||||||||||
| rs31060491 MPD | dbSNP | MGI SNP Detail | Chr14:66761142 | f | Chrna2 : Intron | 1 | SNP | C | C | C | T | C | C | T | T | C/T | ||||||||||
| rs31060489 MPD | dbSNP | MGI SNP Detail | Chr14:66761160 | f | Chrna2 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | A/G | ||||||||
| rs31060487 MPD | dbSNP | MGI SNP Detail | Chr14:66761603 | f | Chrna2 : Intron | 1 | SNP | C | C | C | C | A | C | A | A | C | A/C | |||||||||
| rs31060486 MPD | dbSNP | MGI SNP Detail | Chr14:66761723 | f | Chrna2 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C/T | ||||||||||
| rs30876979 MPD | dbSNP | MGI SNP Detail | Chr14:66761889 | f | Chrna2 : Intron | 1 | SNP | C | C | T | C/T | |||||||||||||||
| rs31060484 MPD | dbSNP | MGI SNP Detail | Chr14:66762328 | f | Chrna2 : Coding-NonSynonymous | 1 | SNP | T | G | T | G | G | T | G/T | ||||||||||||
| rs31059832 MPD | dbSNP | MGI SNP Detail | Chr14:66764043 | f | Chrna2 : Intron | 1 | SNP | A | A | A | A | A | A | A | G | A | A | A/G | ||||||||
| rs31059830 MPD | dbSNP | MGI SNP Detail | Chr14:66764106 | f | Chrna2 : Intron | 1 | SNP | C | C | T | C | C | T | C/T | ||||||||||||
| rs31059828 MPD | dbSNP | MGI SNP Detail | Chr14:66764202 | f | Chrna2 : Intron | 1 | SNP | G | A | A | G | A/G | ||||||||||||||
| rs31059826 MPD | dbSNP | MGI SNP Detail | Chr14:66764452 | f | Chrna2 : Intron | 1 | SNP | G | G | A | G | G | A | G | A/G | |||||||||||
| rs31059824 MPD | dbSNP | MGI SNP Detail | Chr14:66764477 | f | Chrna2 : Intron | 1 | SNP | G | T | G | T | G/T | ||||||||||||||
| rs31058852 MPD | dbSNP | MGI SNP Detail | Chr14:66764541 | f | Chrna2 : Intron | 1 | SNP | G | C | G | C/G | |||||||||||||||
| rs31058850 MPD | dbSNP | MGI SNP Detail | Chr14:66764870 | f | Chrna2 : Intron | 1 | SNP | T | C | T | C/T | |||||||||||||||
| rs31058848 MPD | dbSNP | MGI SNP Detail | Chr14:66764974 | f | Chrna2 : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A/G | |||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31058846 MPD | dbSNP | MGI SNP Detail | Chr14:66765039 | f | Chrna2 : Intron | 1 | SNP | T | T | T | C | T | T | C | T | C | T | C/T | ||||||||
| rs31058844 MPD | dbSNP | MGI SNP Detail | Chr14:66765056 | f | Chrna2 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | G | A | A/G | ||||||||
| rs31057832 MPD | dbSNP | MGI SNP Detail | Chr14:66765090 | f | Chrna2 : Intron | 1 | SNP | T | T | A | T | A | T | A/T | ||||||||||||
| rs31057830 MPD | dbSNP | MGI SNP Detail | Chr14:66765114 | f | Chrna2 : Intron | 1 | SNP | G | A | G | A | A/G | ||||||||||||||
| rs31057828 MPD | dbSNP | MGI SNP Detail | Chr14:66765195 | f | Chrna2 : Intron | 1 | SNP | T | A | T | A/T | |||||||||||||||
| rs31057826 MPD | dbSNP | MGI SNP Detail | Chr14:66765274 | f | Chrna2 : Coding-NonSynonymous | 1 | SNP | T | T | C | C/T | |||||||||||||||
| rs31057824 MPD | dbSNP | MGI SNP Detail | Chr14:66765440 | f | Chrna2 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | A | G | A/G | ||||||||
| rs31056992 MPD | dbSNP | MGI SNP Detail | Chr14:66765454 | f | Chrna2 : Intron | 1 | SNP | T | T | C | T | T | C | C/T | ||||||||||||
| rs31056990 MPD | dbSNP | MGI SNP Detail | Chr14:66766009 | f | Chrna2 : Intron | 1 | SNP | C | T | C | C/T | |||||||||||||||
| rs31056988 MPD | dbSNP | MGI SNP Detail | Chr14:66766385 | f | Chrna2 : Intron | 1 | SNP | C | T | T | C | C/T | ||||||||||||||
| rs31056986 MPD | dbSNP | MGI SNP Detail | Chr14:66766606 | f | Chrna2 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | A | G | A/G | |||||||
| rs31056984 MPD | dbSNP | MGI SNP Detail | Chr14:66766682 | f | Chrna2 : Intron | 1 | SNP | C | C | C | T | C | C | T | C | C/T | ||||||||||
| rs31056092 MPD | dbSNP | MGI SNP Detail | Chr14:66766722 | f | Chrna2 : Intron | 1 | SNP | T | T | C | T | T | C/T | |||||||||||||
| rs31056090 MPD | dbSNP | MGI SNP Detail | Chr14:66766749 | f | Chrna2 : Intron | 1 | SNP | T | C | T | C | C/T | ||||||||||||||
| rs31056088 MPD | dbSNP | MGI SNP Detail | Chr14:66766768 | f | Chrna2 : Intron | 1 | SNP | A | T | T | T | A/T | ||||||||||||||
| rs6187848 MPD | dbSNP | MGI SNP Detail | Chr14:66767303 | f | Chrna2 : Intron | 2 | SNP | C | G | G | C | C | C | G | C | C/G | ||||||||||
| rs6188373 MPD | dbSNP | MGI SNP Detail | Chr14:66767433 | f | Chrna2 : Intron | 1 | SNP | T | A | A/T | ||||||||||||||||
| rs6188802 MPD | dbSNP | MGI SNP Detail | Chr14:66767485 | f | Chrna2 : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs6188830 MPD | dbSNP | MGI SNP Detail | Chr14:66767505 | f | Chrna2 : Intron | 2 | SNP | T | T | T | C | C | T | T | C | T | C/T | |||||||||
| rs31056084 MPD | dbSNP | MGI SNP Detail | Chr14:66767518 | f | Chrna2 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C/T | ||||||
| rs31058860 MPD | dbSNP | MGI SNP Detail | Chr14:66767523 | f | Chrna2 : Intron | 1 | SNP | C | C | A | C | C | A | C | A/C | |||||||||||
| rs31058858 MPD | dbSNP | MGI SNP Detail | Chr14:66767936 | f | Chrna2 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | T | C | C/T | ||||
| rs31058856 MPD | dbSNP | MGI SNP Detail | Chr14:66768039 | f | Chrna2 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | C | T | C/T | |||||
| rs31058854 MPD | dbSNP | MGI SNP Detail | Chr14:66768098 | f | Chrna2 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C | T | C/T | ||||
| rs31058012 MPD | dbSNP | MGI SNP Detail | Chr14:66768140 | f | Chrna2 : Coding-Synonymous | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A/G | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31058010 MPD | dbSNP | MGI SNP Detail | Chr14:66768362 | f | Chrna2 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | A | G | A/G | |||||
| rs31058008 MPD | dbSNP | MGI SNP Detail | Chr14:66768380 | f | Chrna2 : Coding-NonSynonymous | 1 | SNP | T | T | T | T | T | A | T | T | T | T | T | T | A | T | A/T | ||||
| rs31058006 MPD | dbSNP | MGI SNP Detail | Chr14:66768797 | f | Chrna2 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | G | A | A/G | |||||
| rs31058004 MPD | dbSNP | MGI SNP Detail | Chr14:66768861 | f | Chrna2 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||||||
| rs31057022 MPD | dbSNP | MGI SNP Detail | Chr14:66769038 | f | Chrna2 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | A | T | T | T | A/T | ||||||
| rs31057020 MPD | dbSNP | MGI SNP Detail | Chr14:66769093 | f | Chrna2 : Intron | 1 | SNP | C | C | C | C | C | C | C | G | C | C | G | C | C/G | ||||||
| rs31057018 MPD | dbSNP | MGI SNP Detail | Chr14:66769251 | f | Chrna2 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | T | T | T | A | T | A/T | |||||
| rs31057017 MPD | dbSNP | MGI SNP Detail | Chr14:66769680 | f | Chrna2 : Intron | 1 | SNP | T | T | T | T | C | T | T | T | T | T | C | T | C/T | ||||||
| rs31057015 MPD | dbSNP | MGI SNP Detail | Chr14:66770173 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | C | T | C/T | |||||
| rs31056303 MPD | dbSNP | MGI SNP Detail | Chr14:66770286 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | A | G | A/G | |||||
| rs31056301 MPD | dbSNP | MGI SNP Detail | Chr14:66770384 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | C | T | C/T | |||||
| rs31056299 MPD | dbSNP | MGI SNP Detail | Chr14:66770445 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | A | C | A/C | |||||
| rs31056297 MPD | dbSNP | MGI SNP Detail | Chr14:66770857 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | T | A | A/T | |||||
| rs31056295 MPD | dbSNP | MGI SNP Detail | Chr14:66770935 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | T | C | C/T | |||||
| rs31055483 MPD | dbSNP | MGI SNP Detail | Chr14:66771018 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | C | T | C/T | |||||
| rs31055481 MPD | dbSNP | MGI SNP Detail | Chr14:66771046 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C | T | C/T | ||||
| rs31055479 MPD | dbSNP | MGI SNP Detail | Chr14:66771091 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A/G | |||||
| rs31055477 MPD | dbSNP | MGI SNP Detail | Chr14:66771143 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||||
| rs31055475 MPD | dbSNP | MGI SNP Detail | Chr14:66771342 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | G | T | G/T | |||||
| rs31054793 MPD | dbSNP | MGI SNP Detail | Chr14:66771359 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | ||||
| rs31054791 MPD | dbSNP | MGI SNP Detail | Chr14:66771388 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | T | A | A/T | |||||
| rs31054789 MPD | dbSNP | MGI SNP Detail | Chr14:66771430 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||||||
| rs31054787 MPD | dbSNP | MGI SNP Detail | Chr14:66771536 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | T | C | C/T | |||||
| rs31054785 MPD | dbSNP | MGI SNP Detail | Chr14:66771562 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | |||||
| rs30552350 MPD | dbSNP | MGI SNP Detail | Chr14:66771695 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 2 | SNP | G | G | C | C | C | G | G | G | G | C | G | C | C | G | C | C/G | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31054082 MPD | dbSNP | MGI SNP Detail | Chr14:66771700 | f | Chrna2 : mRNA-UTR Ptk2b : Locus-Region | 1 | SNP | A | A | G | G | G | A/G | |||||||||||||
| rs31054080 MPD | dbSNP | MGI SNP Detail | Chr14:66771794 | f | Chrna2 : Locus-Region Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||||
| rs31054078 MPD | dbSNP | MGI SNP Detail | Chr14:66771809 | f | Chrna2 : Locus-Region Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | C | T | T | T | T | T | C | T | C/T | ||||||
| rs31054076 MPD | dbSNP | MGI SNP Detail | Chr14:66771848 | f | Chrna2 : Locus-Region Ptk2b : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs31054074 MPD | dbSNP | MGI SNP Detail | Chr14:66771966 | f | Chrna2 : Locus-Region Ptk2b : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | C | T | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/22/2013 MGI 5.13 |
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