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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Chst3 carbohydrate (chondroitin 6/keratan) sulfotransferase 3 MGI:1858224 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs50468941 MPD | dbSNP | MGI SNP Detail | Chr10:59642762 | f | Chst3 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||||||||||||||||||
| rs49811745 MPD | dbSNP | MGI SNP Detail | Chr10:59642800 | f | Chst3 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs49690284 MPD | dbSNP | MGI SNP Detail | Chr10:59642871 | f | Chst3 : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs47370006 MPD | dbSNP | MGI SNP Detail | Chr10:59642942 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs45950405 MPD | dbSNP | MGI SNP Detail | Chr10:59642978 | f | Chst3 : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A/G | ||||||||||||||||||||||
| rs48726284 MPD | dbSNP | MGI SNP Detail | Chr10:59643227 | f | Chst3 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A/G | ||||||||||||||||||||
| rs50460672 MPD | dbSNP | MGI SNP Detail | Chr10:59643815 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs50701142 MPD | dbSNP | MGI SNP Detail | Chr10:59643890 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C/T | ||||||||||||||||||||||
| rs46006164 MPD | dbSNP | MGI SNP Detail | Chr10:59643905 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C/T | |||||||||||||||||||||
| rs50941568 MPD | dbSNP | MGI SNP Detail | Chr10:59644064 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs48120409 MPD | dbSNP | MGI SNP Detail | Chr10:59644122 | f | Chst3 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||||||||||||
| rs47105885 MPD | dbSNP | MGI SNP Detail | Chr10:59644172 | f | Chst3 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | C | C/T | ||||||||||||||||||||
| rs46083694 MPD | dbSNP | MGI SNP Detail | Chr10:59644274 | f | Chst3 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs46461082 MPD | dbSNP | MGI SNP Detail | Chr10:59644567 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs51165110 MPD | dbSNP | MGI SNP Detail | Chr10:59644674 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||||||||||||||||||||||
| rs46919307 MPD | dbSNP | MGI SNP Detail | Chr10:59644815 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||||||||||||
| rs49519997 MPD | dbSNP | MGI SNP Detail | Chr10:59644964 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||||||||||||||||||
| rs50904393 MPD | dbSNP | MGI SNP Detail | Chr10:59645043 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | G | C | C | C | C | G | C | C/G | ||||||||||||||||||||
| rs45920856 MPD | dbSNP | MGI SNP Detail | Chr10:59645158 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||||||||||||||||||||
| rs51683892 MPD | dbSNP | MGI SNP Detail | Chr10:59645318 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||||||||||||||||||||
| rs49082892 MPD | dbSNP | MGI SNP Detail | Chr10:59645660 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||||||||||||||||||||
| rs6174144 MPD | dbSNP | MGI SNP Detail | Chr10:59645722 | f | Chst3 : mRNA-UTR | 2 | SNP | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||||||||||||||||||
| rs6174197 MPD | dbSNP | MGI SNP Detail | Chr10:59645749 | f | Chst3 : mRNA-UTR | 2 | SNP | A | A | A | A | A | A | C | C | A | A | C | A | A | A | A | C | C | A/C | ||||||||||||||||||
| rs51790996 MPD | dbSNP | MGI SNP Detail | Chr10:59645786 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||||
| rs47635728 MPD | dbSNP | MGI SNP Detail | Chr10:59645802 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | T | G | G | G | G | T | G | G/T | ||||||||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs49617916 MPD | dbSNP | MGI SNP Detail | Chr10:59645834 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C/T | |||||||||||||||||||||
| rs49428239 MPD | dbSNP | MGI SNP Detail | Chr10:59645847 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||||||||||||||||||||
| rs49531192 MPD | dbSNP | MGI SNP Detail | Chr10:59645877 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A/C | ||||||||||||||||||||
| rs48226102 MPD | dbSNP | MGI SNP Detail | Chr10:59646025 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs46322675 MPD | dbSNP | MGI SNP Detail | Chr10:59646026 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | A/G | |||||||||||||||||||||||
| rs48426517 MPD | dbSNP | MGI SNP Detail | Chr10:59646230 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | G | T | G | G/T | ||||||||||||||||||||
| rs49789214 MPD | dbSNP | MGI SNP Detail | Chr10:59646383 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A/G | ||||||||||||||||||||||
| rs49353584 MPD | dbSNP | MGI SNP Detail | Chr10:59646479 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs51122679 MPD | dbSNP | MGI SNP Detail | Chr10:59646537 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||||||||||||||||||
| rs48411387 MPD | dbSNP | MGI SNP Detail | Chr10:59646564 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs47606453 MPD | dbSNP | MGI SNP Detail | Chr10:59646605 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs49049764 MPD | dbSNP | MGI SNP Detail | Chr10:59646637 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | G | A | A/G | |||||||||||||||||||||
| rs50921968 MPD | dbSNP | MGI SNP Detail | Chr10:59646655 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs6191900 MPD | dbSNP | MGI SNP Detail | Chr10:59646724 | f | Chst3 : mRNA-UTR | 2 | SNP | A | A | A | A | A | A | C | C | A | A | C | A | A | A | A | C | A | A/C | ||||||||||||||||||
| rs6191936 MPD | dbSNP | MGI SNP Detail | Chr10:59646744 | f | Chst3 : mRNA-UTR | 2 | SNP | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||||||||||||||||||
| rs6191966 MPD | dbSNP | MGI SNP Detail | Chr10:59646761 | f | Chst3 : mRNA-UTR | 1 | SNP | C | T | C/T | |||||||||||||||||||||||||||||||||
| rs47082123 MPD | dbSNP | MGI SNP Detail | Chr10:59646782 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | |||||||||||||||||||||
| rs51162470 MPD | dbSNP | MGI SNP Detail | Chr10:59646953 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||||||||||||
| rs45920418 MPD | dbSNP | MGI SNP Detail | Chr10:59647104 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | G | C | C | G | C | C | C | C | G | C | C/G | ||||||||||||||||||||
| rs48635792 MPD | dbSNP | MGI SNP Detail | Chr10:59647669 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||||||||||||||||||||
| rs49322366 MPD | dbSNP | MGI SNP Detail | Chr10:59647788 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | C/G | ||||||||||||||||||||
| rs51085791 MPD | dbSNP | MGI SNP Detail | Chr10:59647947 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs50843263 MPD | dbSNP | MGI SNP Detail | Chr10:59648024 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | ||||||||||||||||||||
| rs51943259 MPD | dbSNP | MGI SNP Detail | Chr10:59648072 | f | Chst3 : mRNA-UTR | 1 | SNP | T | T | T | T | T | G | T | T | G | T | T | T | T | G | T | G/T | ||||||||||||||||||||
| rs13480620 MPD | dbSNP | MGI SNP Detail | Chr10:59648241 | f | Chst3 : mRNA-UTR | 2 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A/G | ||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs51131575 MPD | dbSNP | MGI SNP Detail | Chr10:59648246 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | G | C/G | ||||||||||||||||||||
| rs51297556 MPD | dbSNP | MGI SNP Detail | Chr10:59648288 | f | Chst3 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | C/G | ||||||||||||||||||||
| rs51535186 MPD | dbSNP | MGI SNP Detail | Chr10:59648578 | f | Chst3 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | G | C/G | ||||||||||||||||||||
| rs47143507 MPD | dbSNP | MGI SNP Detail | Chr10:59648848 | f | Chst3 : Coding-Synonymous | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | ||||||||||||||||||||
| rs46497162 MPD | dbSNP | MGI SNP Detail | Chr10:59649022 | f | Chst3 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||||||||||||||||||
| rs51164610 MPD | dbSNP | MGI SNP Detail | Chr10:59649994 | f | Chst3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | A | G | A/G | ||||||||||||||||||||
| rs51352168 MPD | dbSNP | MGI SNP Detail | Chr10:59650236 | f | Chst3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs50952040 MPD | dbSNP | MGI SNP Detail | Chr10:59650673 | f | Chst3 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | C | C | C/G | ||||||||||||||||||||
| rs50826033 MPD | dbSNP | MGI SNP Detail | Chr10:59650719 | f | Chst3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs45736494 MPD | dbSNP | MGI SNP Detail | Chr10:59650946 | f | Chst3 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||||||||||||||||||
| rs49426486 MPD | dbSNP | MGI SNP Detail | Chr10:59650991 | f | Chst3 : mRNA-UTR | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | ||||||||||||||||||||
| rs47268893 MPD | dbSNP | MGI SNP Detail | Chr10:59651031 | f | Chst3 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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