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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Sept9
septin 9
MGI:1858222

131 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27030599
MPD | dbSNP | MGI SNP Detail
Chr11:117191568fSept9 : Locus-Region1SNPA AAAA G AGGAAAAGAA/G
rs27030598
MPD | dbSNP | MGI SNP Detail
Chr11:117191624fSept9 : Locus-Region1SNPA AAAA C AACAAAACAA/C
rs27030597
MPD | dbSNP | MGI SNP Detail
Chr11:117191663fSept9 : Locus-Region1SNPT TTTT T TTCTTTTCTC/T
rs27030596
MPD | dbSNP | MGI SNP Detail
Chr11:117191747fSept9 : Locus-Region1SNPC CCCC C CTCCCCCCCC/T
rs27030595
MPD | dbSNP | MGI SNP Detail
Chr11:117191760fSept9 : Locus-Region1SNPC CCCC T CCTCCCCTCC/T
rs27030594
MPD | dbSNP | MGI SNP Detail
Chr11:117191771fSept9 : Locus-Region1SNPA AAAA   AAGAAAAGAA/G
rs27030593
MPD | dbSNP | MGI SNP Detail
Chr11:117192051fSept9 : Locus-Region1SNPG GGGG   GGAGGGGAGA/G
rs27030592
MPD | dbSNP | MGI SNP Detail
Chr11:117192177fSept9 : Locus-Region1SNPC CCCC A CCCCCCCCCA/C
rs27030591
MPD | dbSNP | MGI SNP Detail
Chr11:117192249fSept9 : Locus-Region1SNPG G GG A GGAGGGGAGA/G
rs29398645
MPD | dbSNP | MGI SNP Detail
Chr11:117195790fSept9 : Intron1SNPCCC   T  C        C/T
rs29454000
MPD | dbSNP | MGI SNP Detail
Chr11:117196401fSept9 : Intron1SNP AA   G           A/G
rs29431203
MPD | dbSNP | MGI SNP Detail
Chr11:117196421fSept9 : Intron1SNP GG   C           C/G
rs29472821
MPD | dbSNP | MGI SNP Detail
Chr11:117196462fSept9 : Intron1SNP CC   T           C/T
rs29423177
MPD | dbSNP | MGI SNP Detail
Chr11:117196549fSept9 : Intron1SNP GG   A           A/G
rs29429405
MPD | dbSNP | MGI SNP Detail
Chr11:117197143fSept9 : Intron1SNP CC   G           C/G
rs29389787
MPD | dbSNP | MGI SNP Detail
Chr11:117197230fSept9 : Intron1SNP CC   T           C/T
rs29422599
MPD | dbSNP | MGI SNP Detail
Chr11:117197494fSept9 : Intron1SNPG G   A  G        A/G
rs29437861
MPD | dbSNP | MGI SNP Detail
Chr11:117197653fSept9 : Intron1SNPGGG   A  G        A/G
rs29408919
MPD | dbSNP | MGI SNP Detail
Chr11:117197901fSept9 : Intron1SNPTTT   C  T        C/T
rs29390328
MPD | dbSNP | MGI SNP Detail
Chr11:117197933fSept9 : Intron1SNPAAA   G  A        A/G
rs29434869
MPD | dbSNP | MGI SNP Detail
Chr11:117197975fSept9 : Intron1SNPCCC   T  C        C/T
rs29432690
MPD | dbSNP | MGI SNP Detail
Chr11:117199130fSept9 : Intron1SNP  G   A  G        A/G
rs3695935
MPD | dbSNP | MGI SNP Detail
Chr11:117199427fSept9 : Intron2SNPC C   G  C        C/G
rs3695971
MPD | dbSNP | MGI SNP Detail
Chr11:117199445fSept9 : Intron2SNPG G   A  G        A/G
rs3696010
MPD | dbSNP | MGI SNP Detail
Chr11:117199463fSept9 : Intron2SNPA A   G  A        A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs3696634
MPD | dbSNP | MGI SNP Detail
Chr11:117199579fSept9 : Intron1SNPT     G           G/T
rs3698294
MPD | dbSNP | MGI SNP Detail
Chr11:117199807fSept9 : Intron2SNPCCC   T  C        C/T
rs27030590
MPD | dbSNP | MGI SNP Detail
Chr11:117203160fSept9 : Intron1SNPT TTTT C TT TTTTCTC/T
rs27030589
MPD | dbSNP | MGI SNP Detail
Chr11:117203242fSept9 : Intron1SNPA AAAA   AA AAAAGAA/G
rs27030588
MPD | dbSNP | MGI SNP Detail
Chr11:117203280fSept9 : Intron1SNPC CCCC C CC CCCCCAA/C
rs27030587
MPD | dbSNP | MGI SNP Detail
Chr11:117203298fSept9 : Intron1SNPA AAAA G AA AAAAGAA/G
rs27030586
MPD | dbSNP | MGI SNP Detail
Chr11:117203404fSept9 : Intron1SNPT TTTT T TT TTTTCTC/T
rs27030585
MPD | dbSNP | MGI SNP Detail
Chr11:117203451fSept9 : Intron1SNPC CCCC C CC CCCCTCC/T
rs27030584
MPD | dbSNP | MGI SNP Detail
Chr11:117203530fSept9 : Intron1SNPC CCCC C CC CCCCTCC/T
rs27030583
MPD | dbSNP | MGI SNP Detail
Chr11:117203668fSept9 : Intron1SNPT TTTT T TTTTTTTCTC/T
rs27030582
MPD | dbSNP | MGI SNP Detail
Chr11:117203760fSept9 : Intron1SNPC CCCC   CC CCCCTCC/T
rs27030581
MPD | dbSNP | MGI SNP Detail
Chr11:117203866fSept9 : Intron1SNPT TTTT T TT TTTTATA/T
rs27030580
MPD | dbSNP | MGI SNP Detail
Chr11:117203892fSept9 : Intron1SNPG GGGG T GG GGGGGGG/T
rs27030579
MPD | dbSNP | MGI SNP Detail
Chr11:117205274fSept9 : Intron1SNPC CCCC A CC CCCCCCA/C
rs27030578
MPD | dbSNP | MGI SNP Detail
Chr11:117205373fSept9 : Intron1SNPC CCCC C CC CCCCGCC/G
rs27030577
MPD | dbSNP | MGI SNP Detail
Chr11:117205586fSept9 : Intron1SNPA A AA G AA AAAAGAA/G
rs27030576
MPD | dbSNP | MGI SNP Detail
Chr11:117205617fSept9 : Intron1SNPG GGGG A GG GGGGGGA/G
rs27030575
MPD | dbSNP | MGI SNP Detail
Chr11:117207114fSept9 : Intron1SNPA AAAA T AA AAAATAA/T
rs27030574
MPD | dbSNP | MGI SNP Detail
Chr11:117207183fSept9 : Intron1SNPT TTTT C TT TTTTTTC/T
rs27030573
MPD | dbSNP | MGI SNP Detail
Chr11:117207381fSept9 : Intron1SNPA AAAA G AA AAAAGAA/G
rs27030572
MPD | dbSNP | MGI SNP Detail
Chr11:117207930fSept9 : Intron1SNPA AAAA A AA AAAAGAA/G
rs27030571
MPD | dbSNP | MGI SNP Detail
Chr11:117208674fSept9 : Intron1SNPG GGGG A GG GGGGGGA/G
rs27030570
MPD | dbSNP | MGI SNP Detail
Chr11:117208899fSept9 : Intron1SNPA AAAA G AA AAAA AA/G
rs29465559
MPD | dbSNP | MGI SNP Detail
Chr11:117208978fSept9 : Intron1SNPAAA   G           A/G
rs27030569
MPD | dbSNP | MGI SNP Detail
Chr11:117209112fSept9 : Intron1SNPT TTTT C TT TTTTCTC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27030568
MPD | dbSNP | MGI SNP Detail
Chr11:117209235fSept9 : Intron1SNPG GGGG T GG GGGGGGG/T
rs27030567
MPD | dbSNP | MGI SNP Detail
Chr11:117209459fSept9 : Intron1SNPG GGGG T GG GGGGGGG/T
rs27030566
MPD | dbSNP | MGI SNP Detail
Chr11:117209595fSept9 : Intron1SNPA AAAA T AA AAAATTA/T
rs27030565
MPD | dbSNP | MGI SNP Detail
Chr11:117209819fSept9 : Intron1SNPC CCCC T CC CCCCTTC/T
rs27030564
MPD | dbSNP | MGI SNP Detail
Chr11:117209959fSept9 : Intron1SNPT TTTT T TT TTTTTCC/T
rs27030563
MPD | dbSNP | MGI SNP Detail
Chr11:117210203fSept9 : Intron1SNP  C  C C CC   C  GC/G
rs27030562
MPD | dbSNP | MGI SNP Detail
Chr11:117211179fSept9 : Intron1SNPG GGGG G GG GGGGGAA/G
rs27030561
MPD | dbSNP | MGI SNP Detail
Chr11:117211390fSept9 : Intron1SNPT TTTT T TT TTTT CC/T
rs27030560
MPD | dbSNP | MGI SNP Detail
Chr11:117211458fSept9 : Intron1SNPC CCCC T CC CCCCTCC/T
rs27030559
MPD | dbSNP | MGI SNP Detail
Chr11:117211555fSept9 : Intron1SNPT TTTT C TT TTTTCCC/T
rs27030558
MPD | dbSNP | MGI SNP Detail
Chr11:117211928fSept9 : Intron1SNPG GGGG A GG GGGGGGA/G
rs27030557
MPD | dbSNP | MGI SNP Detail
Chr11:117212409fSept9 : Intron1SNPG GGGG G GG GGGGAGA/G
rs27030556
MPD | dbSNP | MGI SNP Detail
Chr11:117212647fSept9 : Intron1SNPA AAAA A AA AAAAGAA/G
rs27030555
MPD | dbSNP | MGI SNP Detail
Chr11:117212855fSept9 : Coding-Synonymous1SNPT TTTT C TT TTTTTTC/T
rs27030554
MPD | dbSNP | MGI SNP Detail
Chr11:117213144fSept9 : Intron1SNPT TTTT C TT TTTTCCC/T
rs27030553
MPD | dbSNP | MGI SNP Detail
Chr11:117213219fSept9 : Intron1SNPC CCCC C CC CCCCTCC/T
rs27030552
MPD | dbSNP | MGI SNP Detail
Chr11:117213260fSept9 : Intron1SNPG GGGG G GG GGGGAGA/G
rs27030551
MPD | dbSNP | MGI SNP Detail
Chr11:117213488fSept9 : Coding-Synonymous1SNPT TTTT C TT TTTTCCC/T
rs27030550
MPD | dbSNP | MGI SNP Detail
Chr11:117213710fSept9 : Intron1SNPG GGGG   GG GGGGAGA/G
rs27030549
MPD | dbSNP | MGI SNP Detail
Chr11:117213849fSept9 : Intron1SNPC CCCC T CC CCCCCCC/T
rs27030548
MPD | dbSNP | MGI SNP Detail
Chr11:117213955fSept9 : Coding-Synonymous1SNPA AAAA G AA AAAAGAA/G
rs27030547
MPD | dbSNP | MGI SNP Detail
Chr11:117214504fSept9 : Coding-Synonymous1SNPC CCCC C CCCCCCCTCC/T
rs27030546
MPD | dbSNP | MGI SNP Detail
Chr11:117214959fSept9 : Intron1SNPT TTTT C TTCTTTT TC/T
rs27030545
MPD | dbSNP | MGI SNP Detail
Chr11:117214975fSept9 : Intron1SNPC CCCC   CCTCCCC TC/T
rs27030544
MPD | dbSNP | MGI SNP Detail
Chr11:117215060fSept9 : Intron1SNPG GGGG A GGAGGGGGGA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27030543
MPD | dbSNP | MGI SNP Detail
Chr11:117215163fSept9 : Intron1SNPC CCCC C CCCCCCCTCC/T
rs27030542
MPD | dbSNP | MGI SNP Detail
Chr11:117215283fSept9 : Intron1SNPT TTTT G TTGTTTTGTG/T
rs27030541
MPD | dbSNP | MGI SNP Detail
Chr11:117215641fSept9 : Intron1SNPA AAAA T AATAAAATAA/T
rs27030540
MPD | dbSNP | MGI SNP Detail
Chr11:117215693fSept9 : Intron1SNPA AAAA C AACAAAAACA/C
rs27030539
MPD | dbSNP | MGI SNP Detail
Chr11:117215723fSept9 : Intron1SNPA AAAA A AAAAAAAAGA/G
rs27030538
MPD | dbSNP | MGI SNP Detail
Chr11:117215749fSept9 : Intron1SNPG GGGG T GGTGGGGG G/T
rs27030537
MPD | dbSNP | MGI SNP Detail
Chr11:117215860fSept9 : Intron1SNPG GGGG A GGAGGGGA A/G
rs27030536
MPD | dbSNP | MGI SNP Detail
Chr11:117215905fSept9 : Intron1SNPT TTTT   TT TTTTAAA/T
rs27030535
MPD | dbSNP | MGI SNP Detail
Chr11:117215952fSept9 : Intron1SNPG GGGG G GGGGGGGAGA/G
rs27030534
MPD | dbSNP | MGI SNP Detail
Chr11:117216154fSept9 : Coding-Synonymous1SNPG GGGG A GGAGGGGGAA/G
rs27030533
MPD | dbSNP | MGI SNP Detail
Chr11:117216480fSept9 : Intron1SNPG GGGG T GGTGGGGGGG/T
rs27030532
MPD | dbSNP | MGI SNP Detail
Chr11:117216591fSept9 : Intron1SNPA AAAA T AATAAAAAAA/T
rs27030531
MPD | dbSNP | MGI SNP Detail
Chr11:117216642fSept9 : Intron1SNPG GGGG A GGAGGGGGGA/G
rs27030530
MPD | dbSNP | MGI SNP Detail
Chr11:117216645fSept9 : Intron1SNPT TTTT T TTTTTTTATA/T
rs27030529
MPD | dbSNP | MGI SNP Detail
Chr11:117216715fSept9 : Intron1SNPG GGGG G GGGGGGGAGA/G
rs27030528
MPD | dbSNP | MGI SNP Detail
Chr11:117216910fSept9 : Intron1SNPG GGGG   GGAGGGGAAA/G
rs27030527
MPD | dbSNP | MGI SNP Detail
Chr11:117217058fSept9 : Intron1SNPC CCCC T CCTCCCCCCC/T
rs27030526
MPD | dbSNP | MGI SNP Detail
Chr11:117217810fSept9 : Intron1SNPC CCCC C CCCCCCCTCC/T
rs27030525
MPD | dbSNP | MGI SNP Detail
Chr11:117217820fSept9 : Intron1SNPT TTTT C TTCTTTT TC/T
rs27030524
MPD | dbSNP | MGI SNP Detail
Chr11:117217914fSept9 : Intron1SNPG GGGG G GGGGGGGAGA/G
rs27030523
MPD | dbSNP | MGI SNP Detail
Chr11:117218204fSept9 : Intron1SNPG G GG G GG GGGGGAA/G
rs27030522
MPD | dbSNP | MGI SNP Detail
Chr11:117218361fSept9 : Intron1SNPC CCCC C CCCCCCCTTC/T
rs27030521
MPD | dbSNP | MGI SNP Detail
Chr11:117218462fSept9 : Intron1SNPC CCCC   CC CCCCTCC/T
rs27030520
MPD | dbSNP | MGI SNP Detail
Chr11:117218697fSept9 : Intron1SNPA AAAA   AAAAAAAAGA/G
rs27030519
MPD | dbSNP | MGI SNP Detail
Chr11:117219335fSept9 : Intron1SNPG GGGG   GG GGGG AA/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27030518
MPD | dbSNP | MGI SNP Detail
Chr11:117219340fSept9 : Intron1SNPA AAAA G AAGAAAAG A/G
rs27030517
MPD | dbSNP | MGI SNP Detail
Chr11:117219793fSept9 : Intron1SNPT TTTT C TTCTTTTCTC/T
rs27030516
MPD | dbSNP | MGI SNP Detail
Chr11:117219926fSept9 : Intron1SNPG GGGG C GGCGGGGCGC/G
rs27030515
MPD | dbSNP | MGI SNP Detail
Chr11:117219952fSept9 : Intron1SNPC CCCC T CCTCCCCCCC/T
rs27030514
MPD | dbSNP | MGI SNP Detail
Chr11:117220005fSept9 : Intron1SNPA AAAA G AAGAAAAGAA/G
rs27030513
MPD | dbSNP | MGI SNP Detail
Chr11:117220076fSept9 : Intron1SNPT TTTT C TTCTTTTCTC/T
rs6214302
MPD | dbSNP | MGI SNP Detail
Chr11:117220484fSept9 : Intron1SNP      C A         A/C
rs6214788
MPD | dbSNP | MGI SNP Detail
Chr11:117220588fSept9 : Intron1SNP      G T         G/T
rs6215221
MPD | dbSNP | MGI SNP Detail
Chr11:117220632fSept9 : Intron1SNP      T C         C/T
rs6215843
MPD | dbSNP | MGI SNP Detail
Chr11:117220761fSept9 : Coding-Synonymous2SNPT TTTTTCCTTCTTTTCCC/T
rs6216885
MPD | dbSNP | MGI SNP Detail
Chr11:117220897fSept9 : Intron1SNP      T A         A/T
rs6216923
MPD | dbSNP | MGI SNP Detail
Chr11:117220924fSept9 : Intron2SNPT TTTTTCCTTCTTTTCCC/T
rs6216987
MPD | dbSNP | MGI SNP Detail
Chr11:117220962fSept9 : Intron2SNPT TTTTTAATTATTTTA A/T
rs27030512
MPD | dbSNP | MGI SNP Detail
Chr11:117221037fSept9 : Intron1SNPG GGGG G GGGGGGGCGC/G
rs27030511
MPD | dbSNP | MGI SNP Detail
Chr11:117221060fSept9 : Intron1SNPA AAAA   AA AAAAGGA/G
rs27030510
MPD | dbSNP | MGI SNP Detail
Chr11:117221339fSept9 : Intron1SNPA AAAA   AAGAAAAGGA/G
rs27030509
MPD | dbSNP | MGI SNP Detail
Chr11:117221579fSept9 : Intron1SNPA AAAA A AAAAAAAAGA/G
rs27030508
MPD | dbSNP | MGI SNP Detail
Chr11:117221602fSept9 : Intron1SNPC CCCC C CCCCCCCTCC/T
rs27030507
MPD | dbSNP | MGI SNP Detail
Chr11:117221682fSept9 : Intron1SNPC CCCC C CCCCCCCACA/C
rs27030506
MPD | dbSNP | MGI SNP Detail
Chr11:117222278fSept9 : mRNA-UTR1SNPG GGGG A GGAGGGGAAA/G
rs27030505
MPD | dbSNP | MGI SNP Detail
Chr11:117222565fSept9 : mRNA-UTR1SNPT TTTT T TTTTTTTTCC/T
rs27030504
MPD | dbSNP | MGI SNP Detail
Chr11:117222737fSept9 : mRNA-UTR1SNPG GGGG G GGGGGGGAGA/G
rs27030503
MPD | dbSNP | MGI SNP Detail
Chr11:117222908fSept9 : mRNA-UTR1SNPA AAAA A AAAAAAAGAA/G
rs27030502
MPD | dbSNP | MGI SNP Detail
Chr11:117223121fSept9 : mRNA-UTR1SNPG GGGG G GG GGG GAA/G
rs27030501
MPD | dbSNP | MGI SNP Detail
Chr11:117223297fSept9 : mRNA-UTR1SNPC CCCC T CCTCCCCCCC/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27030500
MPD | dbSNP | MGI SNP Detail
Chr11:117223495fSept9 : mRNA-UTR1SNPG GGGG G GGGGGGGGAA/G
rs27030499
MPD | dbSNP | MGI SNP Detail
Chr11:117223654fSept9 : Locus-Region1SNPA AAAA G AAGAAAAGAA/G
rs27030498
MPD | dbSNP | MGI SNP Detail
Chr11:117223686fSept9 : Locus-Region1SNPG GGGG G GGGGGGGAGA/G
rs27030497
MPD | dbSNP | MGI SNP Detail
Chr11:117223984fSept9 : Locus-Region1SNPA AAAA G AAGAAAAGAA/G
rs27030496
MPD | dbSNP | MGI SNP Detail
Chr11:117224077fSept9 : Locus-Region1SNPA AAAA G AAGAAAAGAA/G
rs27030495
MPD | dbSNP | MGI SNP Detail
Chr11:117224086fSept9 : Locus-Region1SNPA AAAA   AA AAAAGAA/G

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last database update
06/05/2013
MGI 5.13
The Jackson Laboratory